PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875904.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 466aa    MW: 50349 Da    PI: 7.6827
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54.2e-37782362133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +++sa e+
  XP_015875904.1  78 SGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAISELPSLnssfpdtpkqlsdekrasvgteqGFDSA-EV 171
                     689*************************************************************8877777776666666666555544444.22 PP

             TCP  74 .eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                       +++ + ++++++++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ ++
  XP_015875904.1 172 dLDGDPNYQHQQQNQHFSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERASKEKEKE 236
                     34444444444555555555555666666666666666664333666*********766665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4379235IPR005333Transcription factor, TCP
PROSITE profilePS5136931.38480138IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.045215233IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEVEESQAQV CKFPRIGNGR NDSNKVGQKG GGDHYLDDED DGELRRAGDG GTYSTINTAN  60
GLRGLHHSSR IIRVSRASGG KDRHSKVLTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP  120
SKAVEWLIKA ASDAISELPS LNSSFPDTPK QLSDEKRASV GTEQGFDSAE VDLDGDPNYQ  180
HQQQNQHFSL SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARERAS KEKEKETESR  240
LPHHTQNINH PNISPNPSFT ELLTNGIGNV NNTTSSPSGS APQNQGGGEP HLFHKATAVA  300
STPMDYFGSG LPGLSSSRTH HSSGFLGPIH MGNSLPQTIS IPPFNVPGEN HGELQHFSFP  360
DLIPVAATSQ HNGGDYNLSF SISSSGHAGF NRGTLQSNSP SSFLPHPQRF SPIDGPNVPF  420
FIGAASAAPS VENHHHHQFP AGFDGRLQLC YGDGSRHSDH KGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2385139155Putative transcription factor PCF6
5zkt_B1e-2385139155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.10.0transcription factor TCP2
RefseqXP_015875894.10.0transcription factor TCP2
RefseqXP_015875904.10.0transcription factor TCP2
TrEMBLA0A2I4GUS80.0A0A2I4GUS8_JUGRE; transcription factor TCP2-like
STRINGEOY276510.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2