PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875746.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 735aa    MW: 79277 Da    PI: 6.5825
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11306362155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  XP_015875746.1 306 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 362
                     57*******************4444.2455535555.779999**************98 PP
2AP246.68.5e-15405456155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_015875746.1 405 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 456
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-19306372No hitNo description
SuperFamilySSF541711.05E-14306372IPR016177DNA-binding domain
PfamPF008471.2E-8306362IPR001471AP2/ERF domain
PROSITE profilePS5103217.319307370IPR001471AP2/ERF domain
SMARTSM003801.1E-22307376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-12307371IPR001471AP2/ERF domain
PRINTSPR003674.1E-6308319IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17405466IPR016177DNA-binding domain
CDDcd000183.23E-24405466No hitNo description
PfamPF008471.1E-9405456IPR001471AP2/ERF domain
SMARTSM003801.5E-33406470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18406465IPR001471AP2/ERF domain
PROSITE profilePS5103219.045406464IPR001471AP2/ERF domain
PRINTSPR003674.1E-6446466IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MASMNWLGFS LSPQELPASQ SHHDHHHHHH QDHSQTSVSR LGFNSDEISG TDVSGECFDL  60
TSESAAPSLN LPPPFGIFEA FNRHNQAQDW NMKGLGMNSD TNYKNTSDLS MLMGTTSTTC  120
SSSQNLENQH HQPKLENFLG RHDPTAADYM FQSCSLQLPS EAPAAETANG GASGGGGSIN  180
NSSIGLSMIK TWLRNQPAPT HTGNKNDGGA TCNNNNNNNN NGGNMMTTTA AAQTLSLSMS  240
TGSQSSSALP LLTSSGGGGG GGSGGDSSSS DNKQQPTSST TAQDGQTGAI ETVPRKSIDT  300
FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY  360
WGTTTTTNFP ISNYEKELEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ  420
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSILESSTLP  480
IGGAAKRLKD VEQAEMTVDG QRTDDDNLSS QLTDGISSYG AAATNHGWPT LAFQQAQPFS  540
MHYPYGQRVW CKQEQDSDNH GFQDLHHQYQ TSSTHNFFQP NSVLHNLMGM DSTSLEHSSG  600
SNNSVIYSNG ASHGDGNGGV GYGSSNGGYA IPMATVISNE NHQNHGNAGN GFGDSDVKAL  660
DYENLFGSAD PYHGRNLYYL SQQSAVGVVK AGGGYDQGSA CNNWVPTAVP TIGPRSGNMA  720
AVCHGAQTFT VWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024926681.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2I4E4460.0A0A2I4E446_JUGRE; AP2-like ethylene-responsive transcription factor BBM
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-125AP2 family protein