PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875713.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 317aa MW: 37257.4 Da PI: 6.7628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.9	1.3e-42	30	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l+pGfrF P+d+elv +yLk+k+++ +l+ + i ev++++++P++L +++k +eke+yfF++r++ky++g+r+nra+ +gyWkatg dk+v++ XP_015875713.1 30 LQPGFRFVPRDHELVGFYLKRKLAHLPLPP-SPIVEVNLHDFNPEELSERYKRpGEKECYFFTPRNRKYKNGNRSNRAAGDGYWKATGADKPVKD 123 579**********************999.78**********9655554889********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g kk+L f++g+ ++gekt+Wvm e+r+ XP_015875713.1 124 TNNVIIGFKKSLSFFRGKPREGEKTNWVMYEFRV 157 ******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-50	26	182	IPR003441	NAC domain
PROSITE profile	PS51005	47.288	30	184	IPR003441	NAC domain
Pfam	PF02365	4.9E-22	32	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MESFGDASDF HREHEFQFVC REGGRENMKL QPGFRFVPRD HELVGFYLKR KLAHLPLPPS 60 PIVEVNLHDF NPEELSERYK RPGEKECYFF TPRNRKYKNG NRSNRAAGDG YWKATGADKP 120 VKDTNNVIIG FKKSLSFFRG KPREGEKTNW VMYEFRVIDP PQCTPNDPND MKLHDWVICE 180 IHEVAHKRIK TMLTRNQHRK KPEPDNKEHE HEHEEHSSSV FGQGNYYGGL EKIVGEPMES 240 YSDNFVQIRD YYANQSSGTY SNDQSLQNHQ LPVLDNQSAM DHNKQLQMVD YYGSHEELQQ 300 FELMNHNDFG DLSRTRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-41	28	183	15	164	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-41	28	183	15	164	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-41	28	183	15	164	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-41	28	183	15	164	NO APICAL MERISTEM PROTEIN
3ulx_A	8e-41	28	182	13	166	Stress-induced transcription factor NAC1
4dul_A	8e-41	28	183	15	164	NAC domain-containing protein 19
4dul_B	8e-41	28	183	15	164	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875713.2	0.0	NAC transcription factor 32-like
Swissprot	A0SPJ6	3e-46	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	Q8GY42	5e-47	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A314ZQ82	3e-57	A0A314ZQ82_PRUYE; NAC transcription factor 29

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-49	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]