PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 41712.2 Da PI: 5.024 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141 | 7.2e-44 | 34 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ++G+rF P d+el+++yLkkk++++ l++ + i ev++y+++P+dL +++k +eke+yfF++rd+ky++g+r+nra+ +gyWkatg dk+v+++ XP_015875710.1 34 QVGYRFCPYDHELLNDYLKKKLANECLPA-NRIFEVNLYQFNPEDLSERYKLpGEKECYFFTPRDRKYKNGSRPNRAAGDGYWKATGADKRVKDN 127 58***************************.77**************9655544789*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg kk+Lvfy+g+ kg+kt+W+mhe+rl XP_015875710.1 128 NNIHVGYKKSLVFYRGKPTKGTKTNWIMHEFRL 160 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-51 | 29 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.268 | 33 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 35 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
METDKDSSSP SVEAQDFPQE PKFQSVGGQE IKFQVGYRFC PYDHELLNDY LKKKLANECL 60 PANRIFEVNL YQFNPEDLSE RYKLPGEKEC YFFTPRDRKY KNGSRPNRAA GDGYWKATGA 120 DKRVKDNNNI HVGYKKSLVF YRGKPTKGTK TNWIMHEFRL NEPPPCTRRG ADDMRLDDWV 180 ICRIYEKAVK GNYKSKTTRI DDEDQEEPED EDEVEEHQDN QEETKHDNSG PGEYTEFEKI 240 VAQPIDNYYN NNFVHRDFYA NNVIYETYLG NQLDIENQFP FENQLLPAMD NQHQIMDYGN 300 QKVHHHLPAL MNDNDFGMLG NLYTANMVDQ PSFKVPPSSI FRTKYLSNLK SLPQDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-49 | 36 | 187 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-49 | 36 | 187 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-49 | 36 | 187 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-49 | 36 | 187 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-49 | 36 | 187 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-49 | 36 | 187 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-49 | 36 | 187 | 20 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875710.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875710.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | Q8H4S4 | 7e-57 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A061GZA8 | 5e-70 | A0A061GZA8_THECC; NAC domain transcriptional regulator superfamily protein, putative | ||||
STRING | EOY32709 | 8e-71 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-53 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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