PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875646.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 416aa    MW: 45609.4 Da    PI: 8.5547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_015875646.1 49 PGEPDCSYYIRTGLCRFGATCRFNHPP 75
                    5789*********************97 PP
2zf-CCCH30.75.3e-108099827
                    GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                    ++++tGtCk+G++CkF+H++
  XP_015875646.1 80 YYLKTGTCKFGATCKFHHPR 99
                    8*****************96 PP
3zf-CCCH36.77.3e-12121145327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C +++rtG+Ck+G++CkF+H++
  XP_015875646.1 121 ETECAYYLRTGQCKFGSTCKFHHPQ 145
                     578********************97 PP
4zf-CCCH382.8e-12278304127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_015875646.1 278 PGQPECQFYMKTGDCKFGAVCRFHHPR 304
                     5789*********************96 PP
5zf-CCCH38.71.7e-12324350127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_015875646.1 324 PGEPLCIFYYRYGICKFGPSCKFDHPM 350
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874876IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-55376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-45474IPR000571Zinc finger, CCCH-type
SMARTSM003560.0327699IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-48099IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-88099IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.49380100IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338118146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6120146IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9121145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4124144IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596277305IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5283305IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211323351IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6326350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEFDAGIPMS LAAVTEAPSL SPSLSQDAMW QMNLRSSETM DSGPYPERPG EPDCSYYIRT  60
GLCRFGATCR FNHPPNRKLY YLKTGTCKFG ATCKFHHPRD KAGIAGRVSL NTSGYPLRPN  120
ETECAYYLRT GQCKFGSTCK FHHPQPNNMM VSMRGSPVYT TVPSPTAPGQ QSYPGGITNW  180
SRASFIPSPR WQGPSSYPPL ILPQGVVSVP GWNAYSGQLG SVSSSENQQI AGNSPIYGTP  240
RQSEQNAASQ GTFSQYRSSS VPVGFYALQR ENVFPERPGQ PECQFYMKTG DCKFGAVCRF  300
HHPRERLIPV PDCVLSPIGL PLRPGEPLCI FYYRYGICKF GPSCKFDHPM GIFTYNLSTT  360
SSTDTPVRRL LGSSSGTAAL NLSSEGLVEA GSKPRRLSLS EPRQMSSGDE NTETEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875645.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW9SVH00.0W9SVH0_9ROSA; Zinc finger CCCH domain-containing protein ZFN-like protein
STRINGXP_010111067.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-172zinc finger protein 1