PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 47942.1 Da PI: 8.5071 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_015875645.1 49 PGEPDCSYYIRTGLCRFGATCRFNHPP 75 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.7e-13 | 95 | 120 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_015875645.1 95 GQPECQYYLKTGTCKFGATCKFHHPR 120 5799********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.7e-12 | 142 | 166 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_015875645.1 142 ETECAYYLRTGQCKFGSTCKFHHPQ 166 578********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_015875645.1 299 PGQPECQFYMKTGDCKFGAVCRFHHPR 325 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.6 | 1.8e-12 | 345 | 371 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_015875645.1 345 PGEPLCIFYYRYGICKFGPSCKFDHPM 371 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.647 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 304 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.211 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-10 | 346 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 347 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEFDAGIPMS LAAVTEAPSL SPSLSQDAMW QMNLRSSETM DSGPYPERPG EPDCSYYIRT 60 GLCRFGATCR FNHPPNRKLA IATARMKGEF PERMGQPECQ YYLKTGTCKF GATCKFHHPR 120 DKAGIAGRVS LNTSGYPLRP NETECAYYLR TGQCKFGSTC KFHHPQPNNM MVSMRGSPVY 180 TTVPSPTAPG QQSYPGGITN WSRASFIPSP RWQGPSSYPP LILPQGVVSV PGWNAYSGQL 240 GSVSSSENQQ IAGNSPIYGT PRQSEQNAAS QGTFSQYRSS SVPVGFYALQ RENVFPERPG 300 QPECQFYMKT GDCKFGAVCR FHHPRERLIP VPDCVLSPIG LPLRPGEPLC IFYYRYGICK 360 FGPSCKFDHP MGIFTYNLST TSSTDTPVRR LLGSSSGTAA LNLSSEGLVE AGSKPRRLSL 420 SEPRQMSSGD ENTETEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875645.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875645.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | B9RFV8 | 0.0 | B9RFV8_RICCO; Nucleic acid binding protein, putative | ||||
STRING | XP_002512627.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |