PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36736.2 Da PI: 8.0182 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.2 | 4.6e-34 | 61 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_015875159.1 61 LPAGVKFDPTDQEIL-EHLEAKVLSDRrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVNtdedgs 151 799***********9.99****9999956644322..22222333336**********.555666777******************744456555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +ge++g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_015875159.1 152 ETRWHKTGKTRPVFL-GGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201 788************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-38 | 55 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.198 | 61 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-15 | 62 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTWCNDSDDE RAIQIITTTS NDASVTISQT KNDEFRTVTC PSCGHHIEFQ DQAGIHDLPG 60 LPAGVKFDPT DQEILEHLEA KVLSDRRKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD 120 GQIRHFFHRP SKAYTTGTRK RRKVNTDEDG SETRWHKTGK TRPVFLGGEV KGFKKILVLY 180 TNYGRQRKPE KTNWVMHQYH LGSNEEEKDG ELVVSKVFYQ TQPRQCGSSI KDSFEKSINI 240 PSSHHHHHIP KKANLMEYYN PPPPPPLNNP QNFINYDHHQ IQGVHNRESP PQLIPNLVVQ 300 GDGSSFIRLT AEASKGKLER KQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875159.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875144.1 | 0.0 | NAC domain-containing protein 73-like isoform X1 | ||||
Refseq | XP_015875152.1 | 0.0 | NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | O49459 | 1e-124 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M5WU50 | 0.0 | M5WU50_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12843 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-127 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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