PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875144.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 322aa    MW: 36736.2 Da    PI: 8.0182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.24.6e-34612011128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp+G++F+Ptd+e++ e+L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  XP_015875144.1  61 LPAGVKFDPTDQEIL-EHLEAKVLSDRrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVNtdedgs 151
                     799***********9.99****9999956644322..22222333336**********.555666777******************744456555 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v+  +ge++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_015875144.1 152 ETRWHKTGKTRPVFL-GGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201
                     788************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3855220IPR003441NAC domain
PROSITE profilePS5100534.19861220IPR003441NAC domain
PfamPF023652.7E-1562201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTWCNDSDDE RAIQIITTTS NDASVTISQT KNDEFRTVTC PSCGHHIEFQ DQAGIHDLPG  60
LPAGVKFDPT DQEILEHLEA KVLSDRRKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD  120
GQIRHFFHRP SKAYTTGTRK RRKVNTDEDG SETRWHKTGK TRPVFLGGEV KGFKKILVLY  180
TNYGRQRKPE KTNWVMHQYH LGSNEEEKDG ELVVSKVFYQ TQPRQCGSSI KDSFEKSINI  240
PSSHHHHHIP KKANLMEYYN PPPPPPLNNP QNFINYDHHQ IQGVHNRESP PQLIPNLVVQ  300
GDGSSFIRLT AEASKGKLER KQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875144.10.0NAC domain-containing protein 73-like isoform X1
RefseqXP_015875152.10.0NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM5WU500.0M5WU50_PRUPE; Uncharacterized protein
STRINGEMJ128430.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-127NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]