PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875094.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 536aa    MW: 58851.1 Da    PI: 9.1812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0595117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_015875094.1  95 FVCEICNKGFQRDQNLQLHRRGH 117
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.94E-794117No hitNo description
Gene3DG3DSA:3.30.160.601.8E-594117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01795117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94995117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355220137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.94E-7167192No hitNo description
SMARTSM00355230172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSIITGVDDG GSFSSGNNTG GEEVHQQQKQ KQELLKHFHG VSNSMSSSTT FSNGSTTQQL  60
QPPPLKKKRN QPGTPDPSAE VIALSPHSLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLRQRSSTD IIRKRVYVCP EPSCVHHNPA RALGDLTGIK KHFCRKHGEK KWKCERCSKK  180
YAVQSDWKAH SKICGTREYK CDCGTIFSRR DSFITHRAFC DAIAEENNKV KANQQQGLMS  240
NIGPILQGQI CKELMSSIPI STNPSTETSH QFNHSDIKTP LTLPHQELLQ VPHKPLNMNG  300
SMFSRSLSAN SSTICEGNEH HFASSGHLSA TALLQKAAEM GATVSTNSVS SPATMNMQKM  360
RYITSMAPAS TYTNNQSTSQ VMAMEYAAAA AGTFANQQFM KKNAQELASP SPQFFNGNGN  420
HGGIGLFDGV FDENSGFMNK MEENNGKSKS VLHGGGDSNI VSGVGSNGSE NVMTLDFLGI  480
NGRARSAAGN FHEQKQIHLQ KKQQDMGFGG LVGHLNMQGL NQFEQHTGME KNLWEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32168232367Zinc finger protein JACKDAW
5b3h_F1e-32168232367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875094.10.0protein indeterminate-domain 7
TrEMBLA0A061FAD61e-178A0A061FAD6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative isoform 1
STRINGEOY114641e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-108indeterminate(ID)-domain 2