PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875083.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 1214aa MW: 136172 Da PI: 9.3658

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e+++++ +++G++ Wk++a+t+ +R+ +++ XP_015875083.1 46 QWSKEELERFYEGYRKYGKD-WKKVAATVR-NRSTEMVE 82 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.348	42	95	IPR017884	SANT domain
SuperFamily	SSF46689	1.2E-10	42	90	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-6	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-8	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	2.29E-5	47	81	No hit	No description
SMART	SM01135	9.6E-59	687	788	IPR033471	DIRP domain
Pfam	PF06584	2.5E-33	687	787	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1214 aa Download sequence Send to blast
MAPTRKSRSV NRRFSNLNEV SQEKDAGNSS KNKQRKRKLS DKLGSQWSKE ELERFYEGYR 60 KYGKDWKKVA ATVRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEETES 120 ERESNDASGV SRKSQKRKRG KDHLITSKDP FQSHSVASAD GCLSLLKKKH FDGNQPRAVG 180 KRTPRFPVSY SHRKDYMENY ISPIKRGRKL ENENDDEVAH VAALALAEAS QRGGSPQVSQ 240 TPYRRTEPIK SSPVQSWERM RPQRETARVK LHGSSMDEDW LEGSIGSRGA ENGDYAKDSS 300 SLLDMEGVGT VEVHRKGKKF YRKKEKVEDM ENDQFDDGGE ACSGTDEGLN INAVKGQVEV 360 EVSNSNAERF SPRGQKKRSK ELFFGDESSA LDALQTLADM SLMMPISTME SESSVQLKEE 420 RTTLDIEDKC SVPEATSTSQ VRNRSKLAGS KQKVPHAISG VENTTSKKSK LGRDSTSDIN 480 TISEAEQQPQ STTKAWKRKR KSGVPEPILP QSKLGTDSTT NINTIFEAEQ QPQSTAKAWK 540 RKRKSLVSSS EAHLDSHTSE PSKTEVFCEE ENKPVVKGKR TGQNTTPSKQ WKSVKSPEGS 600 LSSDYRRTGS DQVVSTSQVP SASQVNLPTK RRSRRKMDLP RALSPKEMIF ADLLKEQLNK 660 CSNSVKEKLS RCLLSYMVRR WCTFEWFYSA IDYPWFAKRE FEEYLNHVGL GHIPRLTRVE 720 WGVIRSSLGK PRRFSEHFLR EEREKLKQYR DSVRKHYSEL RMGIREGLPT DLARPLSVGQ 780 RVIALHPKTR EVHDGSVLTV DHDKCRVQFD RPEIGVELIM DVDCMPLNPL ENMPEALRRQ 840 NISAENFSLA SKELQMNGNL NFGGSMMFAS GGHLEKAPSP MNAFVKHGKG DSTHDISQLK 900 AAADFGIAQQ AARSQGQPCI LANNQAREAD IRALSELTRA LDKKEALLME LNNTNNDILE 960 SQNNGDSFLK DSEPFKKHYA TVLVQLKEAS GQVSSALLHL RQRNTYPGNP LLPWLKHPAY 1020 STIHGGLPSP FDGFSLSQDS ASGVEIVRVS RLEAHRYVDV AIQAFLTRKE GEDPFLRIRE 1080 ALDSIDSKPL APDSRVLVSR SQEQANGNMA HQNQLSSCTA ETTLTSDSPR SNFHTDSDKN 1140 EAVIPSELIT SILATVFMMK TCSERQCPPG DVAQMLESAV TSLHPCCPQN LPLYREIQMC 1200 MGILKTKMLA LVPT

Sequence ? help Back to Top

Protein Sequence Length: 1214 aa Download sequence Send to blast

MAPTRKSRSV NRRFSNLNEV SQEKDAGNSS KNKQRKRKLS DKLGSQWSKE ELERFYEGYR  60
KYGKDWKKVA ATVRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEETES  120
ERESNDASGV SRKSQKRKRG KDHLITSKDP FQSHSVASAD GCLSLLKKKH FDGNQPRAVG  180
KRTPRFPVSY SHRKDYMENY ISPIKRGRKL ENENDDEVAH VAALALAEAS QRGGSPQVSQ  240
TPYRRTEPIK SSPVQSWERM RPQRETARVK LHGSSMDEDW LEGSIGSRGA ENGDYAKDSS  300
SLLDMEGVGT VEVHRKGKKF YRKKEKVEDM ENDQFDDGGE ACSGTDEGLN INAVKGQVEV  360
EVSNSNAERF SPRGQKKRSK ELFFGDESSA LDALQTLADM SLMMPISTME SESSVQLKEE  420
RTTLDIEDKC SVPEATSTSQ VRNRSKLAGS KQKVPHAISG VENTTSKKSK LGRDSTSDIN  480
TISEAEQQPQ STTKAWKRKR KSGVPEPILP QSKLGTDSTT NINTIFEAEQ QPQSTAKAWK  540
RKRKSLVSSS EAHLDSHTSE PSKTEVFCEE ENKPVVKGKR TGQNTTPSKQ WKSVKSPEGS  600
LSSDYRRTGS DQVVSTSQVP SASQVNLPTK RRSRRKMDLP RALSPKEMIF ADLLKEQLNK  660
CSNSVKEKLS RCLLSYMVRR WCTFEWFYSA IDYPWFAKRE FEEYLNHVGL GHIPRLTRVE  720
WGVIRSSLGK PRRFSEHFLR EEREKLKQYR DSVRKHYSEL RMGIREGLPT DLARPLSVGQ  780
RVIALHPKTR EVHDGSVLTV DHDKCRVQFD RPEIGVELIM DVDCMPLNPL ENMPEALRRQ  840
NISAENFSLA SKELQMNGNL NFGGSMMFAS GGHLEKAPSP MNAFVKHGKG DSTHDISQLK  900
AAADFGIAQQ AARSQGQPCI LANNQAREAD IRALSELTRA LDKKEALLME LNNTNNDILE  960
SQNNGDSFLK DSEPFKKHYA TVLVQLKEAS GQVSSALLHL RQRNTYPGNP LLPWLKHPAY  1020
STIHGGLPSP FDGFSLSQDS ASGVEIVRVS RLEAHRYVDV AIQAFLTRKE GEDPFLRIRE  1080
ALDSIDSKPL APDSRVLVSR SQEQANGNMA HQNQLSSCTA ETTLTSDSPR SNFHTDSDKN  1140
EAVIPSELIT SILATVFMMK TCSERQCPPG DVAQMLESAV TSLHPCCPQN LPLYREIQMC  1200
MGILKTKMLA LVPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875083.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875083.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A2P5AMS0	0.0	A0A2P5AMS0_TREOI; Protein LIN-9/Protein ALWAYS EARLY
STRING	XP_008246389.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding