PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875065.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 146aa    MW: 16478.2 Da    PI: 5.6192
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB159.45.5e-50398297
           NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     eqdr+lPianv+rimk++lP  akisk+aket+qec++efisfvt+easdkc++e+rkt+ngdd++wal+ lGf+dy+e +  yl+++re+e+ek
  XP_015875065.1  3 DEQDRLLPIANVGRIMKQILPPSAKISKEAKETIQECATEFISFVTGEASDKCHKENRKTVNGDDICWALGALGFDDYAELILRYLHRHREAEREK 98
                    69*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.0E-502131IPR009072Histone-fold
SuperFamilySSF471131.38E-385127IPR009072Histone-fold
PfamPF008081.7E-26872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-163654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-165573No hitNo description
PRINTSPR006153.4E-167492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVDEQDRLLP IANVGRIMKQ ILPPSAKISK EAKETIQECA TEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALGALGFDDY AELILRYLHR HREAEREKAN QNKLANSTTT SSRDHQDNNK  120
VEDQVPNYKN GHQADQQSDQ IPTPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-40293697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875065.11e-107nuclear transcription factor Y subunit B-4-like
SwissprotO822484e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A061F3317e-68A0A061F331_THECC; Nuclear transcription factor Y subunit B-4
STRINGEOY114611e-68(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]