PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874809.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 727aa    MW: 77517.8 Da    PI: 5.9596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16465511455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  XP_015874809.1 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-17457515No hitNo description
SuperFamilySSF474591.57E-20458522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20458519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MPLSELYRMA KGKLDSNQDF EIGNDIFELV WENGQVTMQG QSSRAKKGPS CNSLPSHCLP  60
SYNLKTRDKD IGNGTISRTG KFGTVGSGLD EIPMSVPSAE MGLNQDDDMM PWLNYPIEES  120
LQHDYCPDFL PELSGVTVNE LSAADNFACV DRRSSCNQVY RDSNTNPVHG DGSLEQRNVS  180
KVASVGGGEV SRPRPGSSQL CPSSSSQQCQ TSFPSLRSRV SDIVGDNTSS VAHQAVCRDS  240
PRVPSPGGFP SKKMQKLDAV PPGSTPAIMN FSHFSRPAAL VKANLQNIGA TTGSALPSMH  300
RVTNKEKGAA ASSNNPPESA PNSSSVGLRK ETSSPCQNVA SNVDLKPSDA MPVEEPFAAK  360
QSEAVCQEDA SKNDTNSNQL FCESAVRGFP DGERTAEPVV ASSSVCSGNS VERVSDDPTH  420
LLKRKCRDTE DSECHSEDAD EESVGVKKIA AARASGSKRS RAAEVHNLSE RRRRDRINEK  480
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PTGMQHMHAP  540
HMAHFSPMGV GMGMGLSMGF GMGMPDMNGG SSGYPMIQVP SMQGAHFPGP PMSGHTAFHG  600
MTGSNLQMFG LHGQGLPMPM QRPPLVPMTG GPFMKSAVGP NVCGASGPME NVESAPPSTS  660
TDPVQNMSSQ VMQNPGANSS MNQTSSQCQP TTERFEQSTL VQNNVQAPDV NGGRAEGNDL  720
VPSGAAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874809.10.0transcription factor PIF3 isoform X2
TrEMBLA0A2P5DRB80.0A0A2P5DRB8_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ084100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-59phytochrome interacting factor 3