PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874807.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27646.8 Da    PI: 10.0193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.6e-171151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i+n+s r+ tf kR++g+ KK  ELS+LCd++++ ii+s+ 
  XP_015874807.1 11 ISNDSARKATFKKRKKGLVKKVGELSTLCDVDACAIIYSPY 51
                    9**************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.507149IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-24295IPR002100Transcription factor, MADS-box
CDDcd002662.56E-21285No hitNo description
PRINTSPR004041.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTRKKVKLAY ISNDSARKAT FKKRKKGLVK KVGELSTLCD VDACAIIYSP YDTQPELFPS  60
PLGVQRVLSK FKKMPEMEQS KKMVNQESFL RQRIAKANEQ LKKQRKDNRE KEMTRVMFQS  120
LTGKGLQGLN MMDLNDLGWL IDQNLKDINK RIESHKAEAS SQKHDVAAPG MSSAADGMAR  180
SGENGSQAMA EKPAFEVNVE TMQRQQWFMD LMNPQEGLGF GGDEMILPFG DHNHNAIWSN  240
PFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYISNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874807.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874807.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A438D0C01e-116A0A438D0C0_VITVI; Agamous-like MADS-box protein AGL80
TrEMBLD7UAA81e-116D7UAA8_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00300.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-67AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]