PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874788.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 303aa    MW: 35230 Da    PI: 6.3683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065161185123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  ++++ H+++  H
  XP_015874788.1 161 FYCDLCNKQYKLAMEFEAHLSSydH 185
                     78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.0E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.97366111IPR000467G-patch domain
PfamPF015859.0E-1667107IPR000467G-patch domain
SuperFamilySSF576676.88E-5149188No hitNo description
PfamPF121711.7E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDHHWYNGRQ ETSNRDKRQQ VMEQAYQESL IEDLAEEFRL PINHRPTENV DLDNVDQASL  60
DTQLTSSNIG YRLLQKMGWK GKGLGKDEQG ITEPIKSGIR DAKLGIGKQE EDDYFTAEEN  120
IQRRKLDVEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGT SSRDDRQKRE QQRQEREMAK FAQMADAHKQ QQQLQHQEEE  240
SGSAQLSSEV KSTSLVTDQE QRKALKFGFS SKGGTSKKSS GATTKKPKVA VASVFNDDSD  300
EEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874787.10.0G patch domain-containing protein 8
RefseqXP_015874788.10.0G patch domain-containing protein 8
RefseqXP_015874789.10.0G patch domain-containing protein 8
RefseqXP_024927028.10.0G patch domain-containing protein 8
TrEMBLA0A2I4EAU90.0A0A2I4EAU9_JUGRE; G patch domain-containing protein 8 isoform X1
STRINGcassava4.1_012893m1e-177(Manihot esculenta)