PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015874787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 35230 Da PI: 6.3683 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 161 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H XP_015874787.1 161 FYCDLCNKQYKLAMEFEAHLSSydH 185 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 2.0E-17 | 64 | 109 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.973 | 66 | 111 | IPR000467 | G-patch domain |
Pfam | PF01585 | 9.0E-16 | 67 | 107 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 6.88E-5 | 149 | 188 | No hit | No description |
Pfam | PF12171 | 1.7E-5 | 161 | 188 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDHHWYNGRQ ETSNRDKRQQ VMEQAYQESL IEDLAEEFRL PINHRPTENV DLDNVDQASL 60 DTQLTSSNIG YRLLQKMGWK GKGLGKDEQG ITEPIKSGIR DAKLGIGKQE EDDYFTAEEN 120 IQRRKLDVEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL 180 SSYDHNHRKR FKEMREMHGT SSRDDRQKRE QQRQEREMAK FAQMADAHKQ QQQLQHQEEE 240 SGSAQLSSEV KSTSLVTDQE QRKALKFGFS SKGGTSKKSS GATTKKPKVA VASVFNDDSD 300 EEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015874787.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874787.1 | 0.0 | G patch domain-containing protein 8 | ||||
Refseq | XP_015874788.1 | 0.0 | G patch domain-containing protein 8 | ||||
Refseq | XP_015874789.1 | 0.0 | G patch domain-containing protein 8 | ||||
Refseq | XP_024927028.1 | 0.0 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A2I4EAU9 | 0.0 | A0A2I4EAU9_JUGRE; G patch domain-containing protein 8 isoform X1 | ||||
STRING | cassava4.1_012893m | 1e-177 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |