PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015874747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 119aa MW: 13449.2 Da PI: 8.3141 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 32 | 48 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +r G+C+yGd+C++ H++ XP_015874747.1 32 LR-GFCQYGDSCRYVHPM 48 44.*************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 1.7E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 8.93E-12 | 4 | 42 | No hit | No description |
Pfam | PF06220 | 1.8E-10 | 5 | 33 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50171 | 8.838 | 6 | 37 | IPR000690 | Zinc finger, C2H2-type matrin |
PROSITE profile | PS50103 | 9.864 | 17 | 49 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 32 | 48 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 33 | 47 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MPLGKYYCDY CDKYFQDTPS ARKRHLQGLQ HLRGFCQYGD SCRYVHPMNR MQNLNPQGIS 60 GFADSSQLST FQGNQLFGGS SVPGDMVRDR MGMSWGNLPP SLKPPPEGGY PMFPFVDWG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015874747.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874747.1 | 2e-84 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 3e-30 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | M5WL08 | 9e-55 | M5WL08_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246287.1 | 1e-56 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26749.1 | 3e-36 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|