PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874666.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 470aa MW: 49855.6 Da PI: 6.7112

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	272	330	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + l se+ XP_015874666.1 272 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTDLSSEN 330 9*****************************************99998888777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-16	268	332	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.024	270	333	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-10	272	324	No hit	No description
Pfam	PF00170	5.5E-9	272	330	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-10	272	327	No hit	No description
CDD	cd14703	1.05E-23	273	322	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MSAEGMQMQD PQSDSSNTKT KTKTKTKTKT KTTTIPKSNP IIPLQPSINP SSSSASSSSS 60 SSAPPNTNSF HHLAQPPPPP HPFPNSNAIT SSSSSSSSPS LTMLGNSNPN PNSSTPFIRG 120 PAAAAGHRRA HSEVTFRLPE DIMDLSSSDP FNGGSSTASF EEIGSEDDLF STYIDVDKLG 180 GNGNGANCAD QNGGGGADGK DENGGGGGGG GEGEKSGSGS GSGCGSGSRP RHRHSSSVDG 240 LSTSTSAFGE IMEAKKAMPP DKLAELWTID PKRAKRILAN RQSAARSKER KARYIQELER 300 KVQTLQTEAT TLSAQLTLFQ RDTTDLSSEN TELKLRLQAM EQQAQLRDAL NDALKKEVER 360 LKVATGEMMS PAESFNLGMH QMPYNQPAYF PLPQQGPVSH LNMQLPSFDH TQANNISAHN 420 MHQSNSHSLS DILQNDPVGR LQGLDISSNG QSKVKSEDPS NSVSESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MSAEGMQMQD PQSDSSNTKT KTKTKTKTKT KTTTIPKSNP IIPLQPSINP SSSSASSSSS  60
SSAPPNTNSF HHLAQPPPPP HPFPNSNAIT SSSSSSSSPS LTMLGNSNPN PNSSTPFIRG  120
PAAAAGHRRA HSEVTFRLPE DIMDLSSSDP FNGGSSTASF EEIGSEDDLF STYIDVDKLG  180
GNGNGANCAD QNGGGGADGK DENGGGGGGG GEGEKSGSGS GSGCGSGSRP RHRHSSSVDG  240
LSTSTSAFGE IMEAKKAMPP DKLAELWTID PKRAKRILAN RQSAARSKER KARYIQELER  300
KVQTLQTEAT TLSAQLTLFQ RDTTDLSSEN TELKLRLQAM EQQAQLRDAL NDALKKEVER  360
LKVATGEMMS PAESFNLGMH QMPYNQPAYF PLPQQGPVSH LNMQLPSFDH TQANNISAHN  420
MHQSNSHSLS DILQNDPVGR LQGLDISSNG QSKVKSEDPS NSVSESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM441534	6e-33	AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence.
GenBank	AM458978	6e-33	AM458978.2 Vitis vinifera contig VV78X009222.1, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874666.1	0.0	transcription factor RF2b-like
Swissprot	O22873	1e-105	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	W9SAC2	1e-179	W9SAC2_9ROSA; Transcription factor RF2b
STRING	XP_010108472.1	1e-180	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-87	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]