PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874389.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 322aa MW: 36937 Da PI: 8.2354

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.1	7.3e-49	12	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+GfrFhP+deel+v+yL++kv++++l++ +vi+e+d+y+++Pw+Lp+ k+ +e+ewyfFs+rd+ky++g r+nra+ gyWkatg dk++l XP_015874389.1 12 PAGFRFHPSDEELIVYYLQNKVTSRPLPA-SVIAEIDLYRYNPWELPSlsnKALFGEDEWYFFSPRDRKYPNGVRPNRAAGLGYWKATGIDKPIL 105 89*************************.99***********53334344899********************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g+kk Lvfy gr pkgektdW+m+eyrl XP_015874389.1 106 TSsGAKPIGVKKALVFYIGRPPKGEKTDWMMDEYRL 141 9866778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-60	7	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.774	11	168	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEEELSSVFK FPAGFRFHPS DEELIVYYLQ NKVTSRPLPA SVIAEIDLYR YNPWELPSLS 60 NKALFGEDEW YFFSPRDRKY PNGVRPNRAA GLGYWKATGI DKPILTSSGA KPIGVKKALV 120 FYIGRPPKGE KTDWMMDEYR LPDSSIKPSR FKGSMRLDDW VLCRVRYKGN MSKNTCAVQD 180 SHSPESVSCM PKVEQRSTCS NYEMITDCLY KDCPLLAYIL AGQAPHPAKT ISNVSMDNYS 240 NLSKRKSYEE TKTENLHSFY NNLDGRNKYE DFLHSKIMAT ESVNGYIGNQ FCNEILNVIP 300 MNSSIKFQEL KELALTDTGR YF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-64	11	165	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-64	11	165	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-64	11	165	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-64	11	165	17	162	NO APICAL MERISTEM PROTEIN
4dul_A	2e-64	11	165	17	162	NAC domain-containing protein 19
4dul_B	2e-64	11	165	17	162	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874389.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874389.1	0.0	NAC transcription factor 32-like isoform X1
Swissprot	K4BNG7	1e-75	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	R4NFT4	1e-121	R4NFT4_JATCU; NAC transcription factor 023
STRING	cassava4.1_029170m	1e-117	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	6e-76	NAC domain containing protein 32

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]