PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015874262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27495.3 Da PI: 10.1293 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.6e-17 | 143 | 225 | 9 | 96 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +v + ++++p +f +eh +++++++l++++g+sW v+l +gr+ + +GW +F ++n+L+ gD ++F+l+gr+e +v+ XP_015874262.1 143 SVQGRYQVYIPSSFSKEHlPF--KKTVEVVLRNQKGESWVVTL--VVARGRHSICRGWLHFMNDNKLELGDRCIFELVGRKEM--KVHS 225 56667789**********633..36789***************..88999999************************997554..5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00354 | 0 | 53 | 64 | IPR000637 | HMG-I/HMG-Y, DNA-binding, conserved site |
Gene3D | G3DSA:2.40.330.10 | 9.8E-22 | 132 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-22 | 133 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.493 | 135 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-11 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-15 | 143 | 226 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.38E-18 | 143 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MCFSIQIFEM NGCERMNVRR TRTDHQSPPT SSKRPQDSTN VPHFKTHQNS ASTTVKRPRG 60 RPRKYPLPTA NHHLSKSCED DSGKSLISCH SNKPNGFIDG KGKEIKTEED DDHRVHDLSK 120 EDMAIDWKAA ESFRSKYPYF TCSVQGRYQV YIPSSFSKEH LPFKKTVEVV LRNQKGESWV 180 VTLVVARGRH SICRGWLHFM NDNKLELGDR CIFELVGRKE MKVHSIRTGP GRRNMFMV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 63 | KRPRGRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015874262.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874262.2 | 1e-180 | B3 domain-containing protein At5g18090-like isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 9e-11 | related to vernalization1 1 |