PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874093.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 357aa MW: 37986.4 Da PI: 10.1155

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	77	137	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ XP_015874093.1 77 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 137 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	64	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	80	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHQQQN HHRLGSGGNS SETPQLPPLP PPPPPHVGVG GGSGGGIGSI 60 RPGSMADRAR LAKLPQPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA 120 LRNVPVGGGC RRNKKSKSNN RSKSPVSTER PMGGSSSTNL MINPSGSDVV SRLLPPPQQN 180 QSSSFMLSIQ NHLSRFAGGG GGGGNLGLNF SEIQVPGDIG FPMGGNSGGN NVMLPGGEAD 240 QWRLQQFPPL MGNGFDSSSS SGLYPFQVGT EGVVEPVLPP MVGESQLIRN FSSSRVSQIN 300 NNPPVKREDN HQGLNLSSSR PTLNAISENN NQFWGGSPWS TDISGGLNSS SSSSHLL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVFSSIPVYL DPPNWHQQQN HHRLGSGGNS SETPQLPPLP PPPPPHVGVG GGSGGGIGSI  60
RPGSMADRAR LAKLPQPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA  120
LRNVPVGGGC RRNKKSKSNN RSKSPVSTER PMGGSSSTNL MINPSGSDVV SRLLPPPQQN  180
QSSSFMLSIQ NHLSRFAGGG GGGGNLGLNF SEIQVPGDIG FPMGGNSGGN NVMLPGGEAD  240
QWRLQQFPPL MGNGFDSSSS SGLYPFQVGT EGVVEPVLPP MVGESQLIRN FSSSRVSQIN  300
NNPPVKREDN HQGLNLSSSR PTLNAISENN NQFWGGSPWS TDISGGLNSS SSSSHLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874093.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874093.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A3Q8TN82	4e-98	A0A3Q8TN82_BOENI; Dof transcription factor 19
STRING	XP_010106451.1	2e-97	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-43	DNA binding with one finger 2.4