PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874060.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WOX
Protein Properties Length: 410aa    MW: 44801.3 Da    PI: 7.3364
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-1856116257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  XP_015874060.1  56 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 116
                     89*****************99*************************************995 PP
2Wus_type_Homeobox1123.1e-3655117264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
     XP_015874060.1  55 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 117
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.51152117IPR001356Homeobox domain
SuperFamilySSF466893.59E-1252121IPR009057Homeodomain-like
SMARTSM003896.8E-954121IPR001356Homeobox domain
CDDcd000861.36E-855117No hitNo description
Gene3DG3DSA:1.10.10.606.8E-755121IPR009057Homeodomain-like
PfamPF000462.2E-1556116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNAH HQWQHDINQS LISSGCHRPS YTSVPGGCEE RSPEPKPRWN  60
PKPEQIRILE AIFNSGMVNP PRDEIRKIRA QLQEYGQVGD ANVFYWFQNR KSRSKHKLRH  120
LQQNSSSSSR QQHSQQTHPS SNNNNSIASI TAPSSSSSSS EKSSPKAAAA AAPPPPQANE  180
TFSMGFPNIV AAADVSNSPT ASVNQTFFQT THNDFLAEPA FFFPVVHQSN NTGGGGGAAG  240
FGFSELSNVD HVSEHNINGP CTSLLLSEIM NHNHPHHHPH HPGENSNRDR EIRKVMKMNQ  300
SHFNYDLTTT TPSSISAHTT TTSSIAAVPS PMNHIQGVGE QEEAVGPGSA ARSTVFINDV  360
AFEVAAGPFN VREAFGDEAV LIHSSGQPVL TNDWGLTLHS LQHGAFYYLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4880262e-63AM488026.2 Vitis vinifera contig VV78X209729.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932919.10.0WUSCHEL-related homeobox 9 isoform X1
TrEMBLA0A061GG541e-161A0A061GG54_THECC; Homeobox-3, putative
STRINGEOY281171e-162(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-63homeobox-3