PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874024.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 680aa MW: 77504.4 Da PI: 6.5137

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.4	2.9e-114	310	678	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL +cA+av++ d++ a+++L+++++++sp+gd +qRla+yf+++L+ rl++ +s ly + ++ ts ++ l+a++++ ++P+ ++s++ XP_015874024.1 310 TLLNHCAQAVANYDQKTANQVLQQIKQHSSPYGDGTQRLAHYFANGLEVRLVG-GSPLYMTYVSNGTS---AADILKAYHAYITACPFKRMSNIF 400 689***********************************************9.99999988888887...99****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN++I + +++++r+HiiDf+i +G QWp+L+q L+ R++gpp+lR+Tg++ p++g +e++eetg+rLa+++++++vpfe++v +ak++e+++ XP_015874024.1 401 ANRTIAKLAAKARRLHIIDFGILYGYQWPCLIQGLSVRSGGPPMLRVTGIEFPQPGfrPSERVEETGRRLANYCKRFNVPFEYHV-IAKKWETIR 494 ***************************************************9************************9.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E +aVn+++++ +++de+v +s+rd+vLkl+k+++P+++++ + +n++ Fl+rf eal+++salfd++ea+l++e+++r XP_015874024.1 495 YEDLKIDRDEFIAVNCIYRMRHIPDETVLEDSPRDTVLKLIKRINPDIFIHGVVNGTYNTPFFLTRFREALYHFSALFDMFEASLSTEDQDRLRF 589 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+e++g++++n++aceg +r+er et+++W+ r +aG+k+vpl+ +++k++k ++r + + + v+e+ ++++gWk+r + ++S+W+ XP_015874024.1 590 EKEVFGKNVMNAIACEGLQRVERPETYKQWQVRNVRAGLKQVPLDREIVKKVKNMVRSEYHKDFVVDEDGMWMLQGWKGRIIKAISCWK 678 *******************************************************9888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.745	282	658	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-111	310	678	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MDTLLEGLPG SVNRFRFDHD STLGYSNRNL AHEFKVEHEF NGSHFPPDDL EIPCDSSSSP 60 SSGSSSSDAD YPENSQDFST AVLKYINEML MEEEDLEVKP CMLQDCLALQ AAEKSLYEVI 120 GQNYPSSFNQ SLSVCSSKRV DSEGGFDQHE FESSFIQNSL TDSPPVDSLL VSDSFSETNY 180 VDHFNEGIKE ARKFLPNRKV EIIDLESSTP LKVDERYKSK SISKGKKNHH REDGDADQQG 240 RSNKHSAVSP DSYEPQEMFD KVLLCQNGHP ELESCADDND KIGEKGKLLT KGSSGKKSRQ 300 KKLEVVDLWT LLNHCAQAVA NYDQKTANQV LQQIKQHSSP YGDGTQRLAH YFANGLEVRL 360 VGGSPLYMTY VSNGTSAADI LKAYHAYITA CPFKRMSNIF ANRTIAKLAA KARRLHIIDF 420 GILYGYQWPC LIQGLSVRSG GPPMLRVTGI EFPQPGFRPS ERVEETGRRL ANYCKRFNVP 480 FEYHVIAKKW ETIRYEDLKI DRDEFIAVNC IYRMRHIPDE TVLEDSPRDT VLKLIKRINP 540 DIFIHGVVNG TYNTPFFLTR FREALYHFSA LFDMFEASLS TEDQDRLRFE KEVFGKNVMN 600 AIACEGLQRV ERPETYKQWQ VRNVRAGLKQ VPLDREIVKK VKNMVRSEYH KDFVVDEDGM 660 WMLQGWKGRI IKAISCWKAA

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MDTLLEGLPG SVNRFRFDHD STLGYSNRNL AHEFKVEHEF NGSHFPPDDL EIPCDSSSSP  60
SSGSSSSDAD YPENSQDFST AVLKYINEML MEEEDLEVKP CMLQDCLALQ AAEKSLYEVI  120
GQNYPSSFNQ SLSVCSSKRV DSEGGFDQHE FESSFIQNSL TDSPPVDSLL VSDSFSETNY  180
VDHFNEGIKE ARKFLPNRKV EIIDLESSTP LKVDERYKSK SISKGKKNHH REDGDADQQG  240
RSNKHSAVSP DSYEPQEMFD KVLLCQNGHP ELESCADDND KIGEKGKLLT KGSSGKKSRQ  300
KKLEVVDLWT LLNHCAQAVA NYDQKTANQV LQQIKQHSSP YGDGTQRLAH YFANGLEVRL  360
VGGSPLYMTY VSNGTSAADI LKAYHAYITA CPFKRMSNIF ANRTIAKLAA KARRLHIIDF  420
GILYGYQWPC LIQGLSVRSG GPPMLRVTGI EFPQPGFRPS ERVEETGRRL ANYCKRFNVP  480
FEYHVIAKKW ETIRYEDLKI DRDEFIAVNC IYRMRHIPDE TVLEDSPRDT VLKLIKRINP  540
DIFIHGVVNG TYNTPFFLTR FREALYHFSA LFDMFEASLS TEDQDRLRFE KEVFGKNVMN  600
AIACEGLQRV ERPETYKQWQ VRNVRAGLKQ VPLDREIVKK VKNMVRSEYH KDFVVDEDGM  660
WMLQGWKGRI IKAISCWKAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-45	312	678	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874024.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874024.2	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5D6F5	0.0	A0A2P5D6F5_TREOI; GRAS transcription factor
STRING	XP_008222411.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]