PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874021.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 689aa MW: 78943.8 Da PI: 5.1843

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.6	1.3e-111	319	687	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL +cAeav++ d++ a+++L+++++++sp+gd +qRla+yf+ AL+ rla +s ly +++++e s +e l+ ++++ +++P+ k+s++ XP_015874021.1 319 TLLNHCAEAVANYDKKTADEFLKQIRQHSSPYGDQTQRLAHYFAIALEVRLAA-SSPLYMTFASNERS---AAELLKGYQVYLNTCPFKKMSNFF 409 689***********************************************9.78888888887777...99****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN++Il+ +e+++r+HiiDf+i +G QWp+L+q+L+sR++gpp lRiTg++ p++g + ++eetg+rLa+++e+++vpfe+n +a+++e+++ XP_015874021.1 410 ANHTILKLAEKASRIHIIDFGILYGYQWPSLIQSLSSRTSGPPLLRITGIELPQPGfrPSGRVEETGRRLANYCERFNVPFEYNG-IAQKWETIR 503 ****************************************************999************************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L++++++ +aVn++ ++ +++de+v + +rd vLkl+k+++P+++v++ +n++ Fl+rf eal+++sa+fd +ea+lpre+++r XP_015874021.1 504 YEDLKIDRDDFIAVNCSSRMRHIPDETVLEDCPRDMVLKLIKEINPDIFVHSVVSGTYNAPIFLRRFKEALYHFSAFFDIYEATLPREDQQRLLF 598 **********************999999*********************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E e++g+++ nv+ace ++r+ r et+++W+ r +aGF ++pl++++ k++k ++r + + + v+e+ ++++gWk+r + ++S+W+ XP_015874021.1 599 EIEVFGKDALNVIACESFQRIDRPETYKQWQVRNIRAGFMQLPLDQEILKKVKNMVRLDYHKDFVVDEDGMWMLQGWKGRIMEAFSCWK 687 ********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.91	291	667	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-109	319	687	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MDTHFRELSG TNQNLVHEFD VIHEVTNSRF LPAGSELPID HSSPSLDLSS SEADYPESRD 60 FSNAILRYIS EMLMEEEDLA DKPCMLQDCL ALQVAEKSLY DVIGKKHPSL NDQNIENIDV 120 KFGQSLGHQG NNKYVPTSNW LGSEGVSNGS IFEFSLIESP QDSLLVPDSS PDTQSISHSK 180 KGIRETGKGI RNGEIEVIDL ESRPSLPQEP RELEDGSFNS QSGSKGKKNH EREDDRDDLE 240 ERSNKQSTVD DESSVPQEMY DEVLLFQTGS QETETSALHD KMKIEKGKLQ SYKQPKGSNV 300 KKAQQKKQYN TSELVDLWTL LNHCAEAVAN YDKKTADEFL KQIRQHSSPY GDQTQRLAHY 360 FAIALEVRLA ASSPLYMTFA SNERSAAELL KGYQVYLNTC PFKKMSNFFA NHTILKLAEK 420 ASRIHIIDFG ILYGYQWPSL IQSLSSRTSG PPLLRITGIE LPQPGFRPSG RVEETGRRLA 480 NYCERFNVPF EYNGIAQKWE TIRYEDLKID RDDFIAVNCS SRMRHIPDET VLEDCPRDMV 540 LKLIKEINPD IFVHSVVSGT YNAPIFLRRF KEALYHFSAF FDIYEATLPR EDQQRLLFEI 600 EVFGKDALNV IACESFQRID RPETYKQWQV RNIRAGFMQL PLDQEILKKV KNMVRLDYHK 660 DFVVDEDGMW MLQGWKGRIM EAFSCWKPA

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MDTHFRELSG TNQNLVHEFD VIHEVTNSRF LPAGSELPID HSSPSLDLSS SEADYPESRD  60
FSNAILRYIS EMLMEEEDLA DKPCMLQDCL ALQVAEKSLY DVIGKKHPSL NDQNIENIDV  120
KFGQSLGHQG NNKYVPTSNW LGSEGVSNGS IFEFSLIESP QDSLLVPDSS PDTQSISHSK  180
KGIRETGKGI RNGEIEVIDL ESRPSLPQEP RELEDGSFNS QSGSKGKKNH EREDDRDDLE  240
ERSNKQSTVD DESSVPQEMY DEVLLFQTGS QETETSALHD KMKIEKGKLQ SYKQPKGSNV  300
KKAQQKKQYN TSELVDLWTL LNHCAEAVAN YDKKTADEFL KQIRQHSSPY GDQTQRLAHY  360
FAIALEVRLA ASSPLYMTFA SNERSAAELL KGYQVYLNTC PFKKMSNFFA NHTILKLAEK  420
ASRIHIIDFG ILYGYQWPSL IQSLSSRTSG PPLLRITGIE LPQPGFRPSG RVEETGRRLA  480
NYCERFNVPF EYNGIAQKWE TIRYEDLKID RDDFIAVNCS SRMRHIPDET VLEDCPRDMV  540
LKLIKEINPD IFVHSVVSGT YNAPIFLRRF KEALYHFSAF FDIYEATLPR EDQQRLLFEI  600
EVFGKDALNV IACESFQRID RPETYKQWQV RNIRAGFMQL PLDQEILKKV KNMVRLDYHK  660
DFVVDEDGMW MLQGWKGRIM EAFSCWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-43	301	688	3	380	Protein SCARECROW
5b3h_A	4e-43	323	688	24	379	Protein SCARECROW
5b3h_D	4e-43	323	688	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874024.2	0.0	scarecrow-like protein 14
TrEMBL	A0A2P5D6F5	0.0	A0A2P5D6F5_TREOI; GRAS transcription factor
STRING	XP_008222411.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-175	GRAS family protein