PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015873960.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 629aa MW: 72007.2 Da PI: 6.7311

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.5	3.7e-112	251	626	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+ lL++cAeav+ +d e a++lL+++++++s g+++qRla f++AL arl++++se+y+al++++ s ++++l+a +lf +sP++k s+ XP_015873960.1 251 LRALLTNCAEAVAVNDRESANELLTQIRQHSSCFGNSTQRLAYAFANALDARLSGTGSEVYRALNAKKLS---MVDKLKACRLFLSASPFIKTSN 342 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +++Nq+Ile +e+++++Hii f+i++G+QWp+L+q L++R++gpp lRiTg++ p++g + ++eetg+ Lak++++++vpfe+n l+a+r+e+ XP_015873960.1 343 FLTNQTILELAEKANTIHIIHFGIGNGFQWPSLIQRLSKRQGGPPLLRITGIDLPSPGfrPEARVEETGKYLAKYCKRFNVPFEYNSLIAERWET 437 ******************************************************99********************************* PP GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.e 280 + e+L++++ +E+++Vn+ ++ +llde+v+++++rd vL+l+ +++P+++v+ +++++ F+ rf eal+++sa fd++ea+ +++ + XP_015873960.1 438 ILCENLKINQrrDEVTVVNCLYRFRHLLDETVTSNNPRDGVLNLISRINPDIFVHGVISGSYDAPFFMSRFKEALHHFSAEFDMMEASSDSQEdK 532 ****9999**********************************************************************777655445 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ri+ E+e+ g ei nv+aceg er+er e +++W+ r ++aG++++pl+ +++k++k + + + + v+e+ +++++gWk+r L+++S+W+ XP_015873960.1 533 DRIVFEQEVYGMEILNVIACEGIERIERPEMYKQWQFRHQRAGLRQLPLNREVMKKVKEQVMSNYHKDFVVDEDGEWMLQGWKGRILYALSCWK 626 ********************************************************9999999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.617	225	606	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-109	251	626	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MSNRREEEII LNSISQILLE EDLEDETTTD MFSNAKLEAA ERSFYDVLAQ KFRSPSSTSN 60 IAPLIINSLN SQIDDRQYYT SIYSNNDAMV SDLHHNSSYN NIPALVLPNF YSNSSESFCS 120 SATSKPPRTG FIEKNNTLIP DLELNRTSST ISFHHLSSAL RKRKNHHQPT ESHESERERN 180 NNYKHLALYP EHQSDKFIDL FDKVLLSNGE DSSSLELSTN HQINIGQSKG CVIGGSVRRK 240 KQVNIEDLVD LRALLTNCAE AVAVNDRESA NELLTQIRQH SSCFGNSTQR LAYAFANALD 300 ARLSGTGSEV YRALNAKKLS MVDKLKACRL FLSASPFIKT SNFLTNQTIL ELAEKANTIH 360 IIHFGIGNGF QWPSLIQRLS KRQGGPPLLR ITGIDLPSPG FRPEARVEET GKYLAKYCKR 420 FNVPFEYNSL IAERWETILC ENLKINQRRD EVTVVNCLYR FRHLLDETVT SNNPRDGVLN 480 LISRINPDIF VHGVISGSYD APFFMSRFKE ALHHFSAEFD MMEASSDSQE DKDRIVFEQE 540 VYGMEILNVI ACEGIERIER PEMYKQWQFR HQRAGLRQLP LNREVMKKVK EQVMSNYHKD 600 FVVDEDGEWM LQGWKGRILY ALSCWKPAY

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MSNRREEEII LNSISQILLE EDLEDETTTD MFSNAKLEAA ERSFYDVLAQ KFRSPSSTSN  60
IAPLIINSLN SQIDDRQYYT SIYSNNDAMV SDLHHNSSYN NIPALVLPNF YSNSSESFCS  120
SATSKPPRTG FIEKNNTLIP DLELNRTSST ISFHHLSSAL RKRKNHHQPT ESHESERERN  180
NNYKHLALYP EHQSDKFIDL FDKVLLSNGE DSSSLELSTN HQINIGQSKG CVIGGSVRRK  240
KQVNIEDLVD LRALLTNCAE AVAVNDRESA NELLTQIRQH SSCFGNSTQR LAYAFANALD  300
ARLSGTGSEV YRALNAKKLS MVDKLKACRL FLSASPFIKT SNFLTNQTIL ELAEKANTIH  360
IIHFGIGNGF QWPSLIQRLS KRQGGPPLLR ITGIDLPSPG FRPEARVEET GKYLAKYCKR  420
FNVPFEYNSL IAERWETILC ENLKINQRRD EVTVVNCLYR FRHLLDETVT SNNPRDGVLN  480
LISRINPDIF VHGVISGSYD APFFMSRFKE ALHHFSAEFD MMEASSDSQE DKDRIVFEQE  540
VYGMEILNVI ACEGIERIER PEMYKQWQFR HQRAGLRQLP LNREVMKKVK EQVMSNYHKD  600
FVVDEDGEWM LQGWKGRILY ALSCWKPAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-49	240	627	8	380	Protein SCARECROW
5b3h_A	2e-49	240	627	7	379	Protein SCARECROW
5b3h_D	2e-49	240	627	7	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873960.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2N9G724	0.0	A0A2N9G724_FAGSY; Uncharacterized protein
STRING	VIT_08s0007g00510.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-147	SCARECROW-like 14