PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015873959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 651aa MW: 74769.6 Da PI: 8.0099 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.4 | 1.2e-113 | 273 | 649 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+ lL++cAeav+ ++ e a++lL+++++++s g++ qRla+ f++AL arl+++++e+y+al++++ s ++++l+a++lf ++P++k s+ XP_015873959.1 273 LRALLTNCAEAVAVNKRESAHQLLTQIRQHSSCFGNSSQRLAHSFANALDARLSGTGNEVYRALNAKNFS---VVDKLKATRLFLSACPLIKTSN 364 5789*****************************************************************9...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ Nq +le +e+++++H+iDf+i++G+QWp+L+q L+ Rp+gpp lRiTg+++p +g + +le tg rLak++++++vpf +n +a r+e+ XP_015873959.1 365 FLVNQKVLELAEKANTIHVIDFGIGHGFQWPSLIQRLSRRPRGPPLLRITGIDHPLPGlrPEARLEVTGTRLAKYCKRFNVPFVYNC-IAARWET 458 ********************************************************9999***************************.79***** PP GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279 +++e+L++++ E+++Vn+ ++ +llde+vs +++rd vLkl+++++P+++v+ +a+++++ F+ rf eal+++sa+fd+lea+ ++++ XP_015873959.1 459 ISYENLNINHrdVEVTIVNCLFRFRHLLDETVSWDNPRDCVLKLIRRINPHIFVHGVVNASYDAPFFMSRFKEALHHFSAVFDMLEATSGSQEgd 553 *******999889************************************************************************9998887777 PP GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ri++E+e+ g++i nv+aceg+er+er e +++W+ r +++G++++pl+ +++k++k ++ + + + v+e+ +++++gWk+r L+++S+W XP_015873959.1 554 eKDRIMLEQEVYGKHILNVIACEGFERIERPEMYKQWQFRHQRVGLRQIPLNREVMKKVKEQVKSSYHKDFVVDEDGEWMLQGWKGRILYALSCW 648 89*****************************************************************888************************* PP GRAS 374 r 374 + XP_015873959.1 649 K 649 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.307 | 247 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-111 | 273 | 649 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MNIEKTNNRR EEEIILNSIS QILLEEDLED VTTTDKFPNA TLEAAEKSFY DVLSQKFCSS 60 STSIIPPLII NSFNSQSDDH QYYTTIYSND AIVSNLHHIS SYNNNIPALP NFYSTGSQST 120 SCSLSTNNGD SINRRPLNMY HPFSKTPLTG FIEKNDNLIP LDFNETLSTV SSHHLYGKMR 180 KRKNHHHPPT ESHETERERN NNYKHRALYP EDQSDECIDL LDKVLFSNGE DTYSSVETST 240 NHHQISCRQT KGCIIGGSLR RKKKTNIEDL VDLRALLTNC AEAVAVNKRE SAHQLLTQIR 300 QHSSCFGNSS QRLAHSFANA LDARLSGTGN EVYRALNAKN FSVVDKLKAT RLFLSACPLI 360 KTSNFLVNQK VLELAEKANT IHVIDFGIGH GFQWPSLIQR LSRRPRGPPL LRITGIDHPL 420 PGLRPEARLE VTGTRLAKYC KRFNVPFVYN CIAARWETIS YENLNINHRD VEVTIVNCLF 480 RFRHLLDETV SWDNPRDCVL KLIRRINPHI FVHGVVNASY DAPFFMSRFK EALHHFSAVF 540 DMLEATSGSQ EGDEKDRIML EQEVYGKHIL NVIACEGFER IERPEMYKQW QFRHQRVGLR 600 QIPLNREVMK KVKEQVKSSY HKDFVVDEDG EWMLQGWKGR ILYALSCWKP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-49 | 279 | 650 | 25 | 380 | Protein SCARECROW |
5b3h_A | 5e-49 | 279 | 650 | 24 | 379 | Protein SCARECROW |
5b3h_D | 5e-49 | 279 | 650 | 24 | 379 | Protein SCARECROW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015873959.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873959.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2P5D652 | 0.0 | A0A2P5D652_TREOI; GRAS transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-142 | SCARECROW-like 14 |