PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873804.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 708aa    MW: 76629.2 Da    PI: 5.8691
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07279300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f+++ tC+ Gd C +aHg
  XP_015873804.1 279 PCPEFRKGSTCSKGDDCEYAHG 300
                     8******99************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.15E-1533150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.8E-1638174IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.93775150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009575105IPR002110Ankyrin repeat
CDDcd002044.70E-777150No hitNo description
PfamPF136371.2E-877134No hitNo description
PROSITE profilePS5008812.636110145IPR002110Ankyrin repeat
SMARTSM002487.8E-4110142IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.106.7E-4271302IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943274302IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5279300IPR000571Zinc finger, CCCH-type
SMARTSM0035631310333IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MCSGPKRKPA SPGLIMEGEL EKQEGLRYNF SVLLELSASD DLNGFKSAVV EEGLDIDEAT  60
FWYGRRIGSK KLGFEQRTPL MIAAMFGSKG VLNYILEKDV VDVNRVCGSD GATALHCAAA  120
GGSATSVEVV KLLLAASANL NAADSNGNRP GDVIAPSSRP AFNPRKKVLE IMLKGTSSVE  180
ETFGLSEQIV QESEVHEQQE IPTPRFSKDG VEKKEYPIDL SLPDIKNGIY STDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYNYSCVPC PEFRKGSTCS KGDDCEYAHG  300
IFECWLHPAQ YRTRLCKDET GCTRRVCFFA HKPEELRPLY PSTGSAVPSP RSFSACASSL  360
DMGSISPLAL GSPSILMPAT STPPMTPTGA SSPMGGNMWQ SQSNLAPPTL QLPGSRLKAA  420
LSARDMDLDM ELLGMETHRR RQQQQLMDEM SGLSSPSSWN NGLSSASAFA ASADRSGEFS  480
RIGMKPTNLD DIFGSVDPPI LPQLQGLSLD TTASQLQSPN GVHMRQNMNQ LRTSYPTSLS  540
SPPARAPSFG VDTTGATAAA VLNSRSAAFA KRSQSFIERS AVNRHTGFSS PAGSASMATS  600
NLSDWGSPDG KLDWGIQGEE LSKLRKTASF GLRSSGNSYA AAAASSMPTT VDEPDVSWVQ  660
SLVKDAPPAK PGQIGFEEQQ QCHLDTAASE MLPAWVEQLY MEQEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873804.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A061GWD40.0A0A061GWD4_THECC; Zinc finger family protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein