PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015873700.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 312aa MW: 35069.2 Da PI: 6.5203

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	281.2	3.1e-86	22	309	138	374
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................. 214 ++ +RiTgv++ ++e l ++++rL++ Ae+l++pf+fn+ ++++le+l++e+Lrvk+gEala+++ lqlh+ll XP_015873700.1 22 KTEGIRITGVHQ----QREVLDQMAHRLTEEAEKLDIPFQFNP-IVSKLENLDVEQLRVKTGEALAISSDLQLHSLLasddellrkksplpskti 111 45569*****....9**********************.7999******************************************* PP GRAS 215 ..........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 sv+ +++L+ +++l Pk++v++eq+++hn++s++er+leal+ y+al XP_015873700.1 112 ngthlsrvlqmnqstlgellekdlvngyspspdsasssplslTTSVK----MESFLNSLWGLTPKIMVITEQDSNHNGSSLMERLLEALYSYAAL 202 ******************************9976554444444....556************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 fd+le+++ r+s er kvE++l+g+ei+n++acegaer+erhe+l kW +rl++aGF++vpls++ + qa++ll+ ++ dgyr++eesgs++++W XP_015873700.1 203 FDCLESTMTRTSVERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLDSAGFGNVPLSYYGMLQARRLLQGYGCDGYRIKEESGSVLICW 297 ******************************************************************************************* PP GRAS 363 kdrpLvsvSaWr 374 +drpL+s+SaWr XP_015873700.1 298 QDRPLFSISAWR 309 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.492	1	289	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-83	22	309	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MVFGSTSKSF LAIPILTPLG NKTEGIRITG VHQQREVLDQ MAHRLTEEAE KLDIPFQFNP 60 IVSKLENLDV EQLRVKTGEA LAISSDLQLH SLLASDDELL RKKSPLPSKT INGTHLSRVL 120 QMNQSTLGEL LEKDLVNGYS PSPDSASSSP LSLTTSVKME SFLNSLWGLT PKIMVITEQD 180 SNHNGSSLME RLLEALYSYA ALFDCLESTM TRTSVERLKV EKMLFGEEIK NIIACEGAER 240 KERHEKLDKW IQRLDSAGFG NVPLSYYGML QARRLLQGYG CDGYRIKEES GSVLICWQDR 300 PLFSISAWRC RK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-28	15	309	127	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024926538.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	1e-144	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2N9J6M9	0.0	A0A2N9J6M9_FAGSY; Uncharacterized protein
STRING	EOY32806	1e-175	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-142	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]