PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015873601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 340aa MW: 36377.3 Da PI: 6.7863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.0008 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_015873601.1 142 YECKTCNRTFPSFQALGGHRASH 164 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 238 | 260 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H XP_015873601.1 238 HECSVCGSEFTSGQALGGHMRRH 260 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-13 | 141 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-8 | 141 | 164 | No hit | No description |
SMART | SM00355 | 0.052 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 142 | 169 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-8 | 233 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-4 | 236 | 260 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.023 | 238 | 260 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 238 | 265 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-11 | 238 | 262 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 240 | 260 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MELAPEEFVG SNSNNNNDES QSHLIVKGKR TKRRHRSPSS PSPPTLLAAT SSSSSATAGG 60 DEYLSLSSPT TSSGGGGCGG GGEIYESTEE EEDMANCLIL LAQGDHAFKQ IEKLSPTITT 120 TTTTTAANTS VSGVGKAGFF VYECKTCNRT FPSFQALGGH RASHKKPRAA MVEDKKASPP 180 ISTNIMDIEY EDVLVFNKVN STSNITTAPP TSHNNSMPLQ QIANVKAFIQ SNKAAKIHEC 240 SVCGSEFTSG QALGGHMRRH RAASSAQSLE IVTNTSTSTS TTRTSNNSSM DEMKQRNILA 300 LDLNLPAPED DHHRESNKFQ FVPTQQALVF SSPALVDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015873601.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873601.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P6QGP9 | 4e-83 | A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | POPTR_0009s01020.1 | 3e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-46 | C2H2 family protein |