PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873459.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 308aa    MW: 33231.9 Da    PI: 4.3198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012282305123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+ksF +   L++H +  H
  XP_015873459.1 282 FSCKSCSKSFGSENALQSHSKAkH 305
                     89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030668.7E-73177No hitNo description
PROSITE profilePS5015712.362282308IPR007087Zinc finger, C2H2
SMARTSM003550.0078282305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEFWGVEVKA GEPLKVKPEL GYVIHLSQAC LGETKKDKGN DSVLLNLKVG DQKLVLGLLS  60
LEKIPQLSFD LVFEKEFELS HNWKNGSVYF CGYQTQYGEE NDFSDLDDSE EEEEDVPSAV  120
TENGKGGQKV EQAKPASAKS IAAKPESSEK PKVKLVEPSK DEDDEDSDDD DDDDDSDGDE  180
GSDDESDDED MLDADSDDDD EGSDEEDEET PKKVESGKKR PNQSAVKTPV SVKKAKPDSA  240
QKSGGKKGAP HTATPHPAKN AGKRSGTADK SKAQTPKSGG QFSCKSCSKS FGSENALQSH  300
SKAKHAGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873459.10.0histone deacetylase HDT1-like
TrEMBLA0A2C9V3P61e-105A0A2C9V3P6_MANES; Uncharacterized protein
STRINGXP_006484980.18e-93(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-37histone deacetylase 3