PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873405.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 368aa    MW: 41161.3 Da    PI: 5.7103
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.98.7e-35119207366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 
                     g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+i+WL+ +ak+ai +l+++                          
  XP_015873405.1 119 GRKDRHSKVRTSKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAIDWLIDKAKAAIEALAEQrtenldslnvddsiprtkhlgkqsiY 207
                     89*************************************************************66666555544322222222222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-32119209IPR005333Transcription factor, TCP
PROSITE profilePS5136933.002120178IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLQARDYKDE KRETEDEDHQ GEEEDNEEEE EDEDELGQKK HKILTDCQHV QSPLSGAMRG  60
KLFQDDRANS SRKRCCSTRS GRLKENELYQ NHPFSKLRLE NEAGEGLQVN GGRIIRSIGR  120
KDRHSKVRTS KGPRDRRVRL SAHTAIQFYD VQDRLGFDRP SKAIDWLIDK AKAAIEALAE  180
QRTENLDSLN VDDSIPRTKH LGKQSIYQHP SNFSISGSTP SSSNQFQDYP PEENSIQDLC  240
VSLQPLKAPV FDVHLSSPID SGELALDDLN ASVMGGQFQG LIDWNSNNAG VERDGSFFDP  300
SSAISPQQPV LSQQHHLFTK RGPLHSSNLL PLHAWTDPPM SINDHGQTQS PTSHSVSSIG  360
FSGGFLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-17125178154Putative transcription factor PCF6
5zkt_B3e-17125178154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873405.10.0transcription factor TCP4-like
STRINGXP_010108419.17e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3