PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015873165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | YABBY | ||||||||
Protein Properties | Length: 174aa MW: 19192.7 Da PI: 9.5128 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 193.9 | 7.2e-60 | 11 | 147 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee.nlksnvekeesastsvsseklsenedeevprvppvir 117 vsvP +slf++vtvrCGhC++llsvn+ + q+++ ++ + +++++++++ + k+ ++++++++ + e+ ++e pr pp ir XP_015873165.1 11 VSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDPTQL------QKQKQSTDDsSGKESGSSSKCNNKLSA----IESVEHEQPRLPP-IR 94 9**********************************9996222......222222222022222222222222222....3456778899999.9* PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_015873165.1 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147 ***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-62 | 11 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 92 | 140 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 95 | 141 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MLSYLGLQPY VSVPCSSLFT IVTVRCGHCA NLLSVNMGAS LQTIPPQDPT QLQKQKQSTD 60 DSSGKESGSS SKCNNKLSAI ESVEHEQPRL PPIRPPEKRQ RVPSAYNRFI KEEIQRIKAS 120 NPDISHREAF STAAKNWAHF PHIHFGLKLD GPNKQAKLDP AIAGDGTQKP NGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015873165.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873165.1 | 1e-128 | putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q9XFB0 | 2e-70 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2H5Q3I8 | 7e-89 | A0A2H5Q3I8_CITUN; Uncharacterized protein | ||||
STRING | XP_006487832.1 | 5e-89 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-67 | YABBY family protein |
Publications ? help Back to Top | |||
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