PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015873164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20533.3 Da PI: 8.6951 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235.6 | 1.1e-72 | 6 | 159 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+ + q+++ ++ ++++++ +++++ k+ ++++++++ + XP_015873164.1 6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDP-------TQKQKQSTDDSSGKESGSSSKCNNKLSAI- 92 689************************************************9999995.......33333333333333333344444333333. PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e+ ++e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_015873164.1 93 ---ESVEHEQPRLPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 ...456778899999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-75 | 7 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 104 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-5 | 107 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MSLEMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCANLLSVN MGASLQTIPP 60 QDPTQKQKQS TDDSSGKESG SSSKCNNKLS AIESVEHEQP RLPPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGPNKQAKL DPAIAGDGTQ 180 KPNGFY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015873164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873164.1 | 1e-139 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 9e-84 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | K9P2Z3 | 1e-106 | K9P2Z3_9ROSI; YABBY2-like transcription factor YAB2 | ||||
STRING | EOY33226 | 1e-104 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-81 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|