PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015873163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 20774.6 Da PI: 8.6951 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 238 | 2.1e-73 | 6 | 161 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee.nlksnvekeesastsvss 98 +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+ + q+++ ++ + +++++++++ + k+ ++++++++ + XP_015873163.1 6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDPTQL------QKQKQSTDDsSGKESGSSSKCNNKLSA- 93 689***************************************************9996222......222222222022222222222222222. PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e+ ++e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_015873163.1 94 ---IESVEHEQPRLPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 ...3456778899999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.2E-76 | 7 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 106 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.0E-5 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSLEMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCANLLSVN MGASLQTIPP 60 QDPTQLQKQK QSTDDSSGKE SGSSSKCNNK LSAIESVEHE QPRLPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLDGPNKQA KLDPAIAGDG 180 TQKPNGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015873163.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873163.1 | 1e-140 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 6e-84 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | K9P2Z3 | 1e-105 | K9P2Z3_9ROSI; YABBY2-like transcription factor YAB2 | ||||
STRING | XP_006487832.1 | 1e-104 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-81 | YABBY family protein |
Publications ? help Back to Top | |||
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