PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015872898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 169aa MW: 18041.7 Da PI: 9.137 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.1e-12 | 109 | 135 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015872898.1 109 PGEPECQYYIKTGDCKYGSSCRYHHPR 135 5899*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.5E-5 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 114 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MPEQYPGAST SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP VSPVLSPGAA 60 QPPVAATSLY GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG EPECQYYIKT 120 GDCKYGSSCR YHHPRDRVVP RTNCLLSPIG LPLRPVGKII YPYLAWCSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015872898.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872898.1 | 1e-116 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_024925864.1 | 1e-113 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 5e-68 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1U8LUH9 | 1e-79 | A0A1U8LUH9_GOSHI; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | Gorai.008G009500.1 | 4e-80 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-66 | C3H family protein |