PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872891.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 261aa    MW: 29792 Da    PI: 5.2448
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.8e-4841351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppGfrF Pt+eelv++yL +k+egk+ e+++vik vdiy++ePw+Lp+     +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+   
  XP_015872891.1   4 LPPGFRFYPTEEELVSFYLLNKLEGKRQEIDRVIKIVDIYNIEPWNLPQfsgeLCHGDTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPGY 98 
                     79****************************999***************656754445777*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  XP_015872891.1  99 VYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-503161IPR003441NAC domain
PROSITE profilePS5100550.7084162IPR003441NAC domain
PfamPF023656.3E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEELPPGFRF YPTEEELVSF YLLNKLEGKR QEIDRVIKIV DIYNIEPWNL PQFSGELCHG  60
DTEQWFFFTP RQEREARGGR PNRTTASGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA  120
PTGRKTKWKM NEYRAIEEEG TSTGITTPKL RHEFSLCRVY VVSGSFRAFD RRPLEVTSET  180
QHQGDTAVTS SQNTAMETQH QGGTAVTSSQ NTAMVQKTSS PETSYSGGDR ADPREAGGST  240
DWDMNDDLEQ PLWEWEQLNW P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-38416015166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872891.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872891.10.0NAC domain-containing protein 90-like
SwissprotQ9FMR34e-93NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2P5CWM21e-134A0A2P5CWM2_PARAD; NAC domain containing protein
STRINGXP_010102010.11e-133(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.28e-95NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]