PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872885.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 264aa    MW: 30216.1 Da    PI: 8.4838
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.23.1e-40125201278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  XP_015872885.1 125 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 201
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-32118186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.009122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37123204IPR004333Transcription factor, SBP-box
PfamPF031106.9E-30125198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MYFASDFFLQ LRNQKGNQGE QIEKVDGVME WDLKEFAWES THELDQQKEE SDLTAMVEFS  60
TSKKQTTTTT VNGSSGDLKL TVVDSAEPVS FSKSNEARTT SILASSPTSP GPSSKKVNGA  120
QKVSCLVDDC KADLSSCREY HKRHRVCERH SKTPTVMVKG EEKRFCQQCS RFHALGEFDE  180
VKRSCRKRLD GHNRRRRKSQ PESLLFTSKS FLSSAYKGLD WTNFTYFLVD HALIYISIHI  240
LVSKIQQQRE FWLLIVLHVD SQSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261251981184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872885.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872885.10.0squamosa promoter-binding protein 2-like, partial
SwissprotQ49I573e-40TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A2P5FC863e-78A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.15e-61(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-41SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]