PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872841.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 164aa    MW: 18266.2 Da    PI: 5.6576
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP91.49.7e-29109164257
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--S CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDe 57 
                     C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe
  XP_015872841.1 109 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDE 164
                     *******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-29102164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.282106164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-27107164IPR004333Transcription factor, SBP-box
PfamPF031103.0E-22109164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
NQGEQIEKVD GVMEWDLKEF AWESTHELDQ QKEESDLTAM VEFSTSKKQT TTTTVNGSSG  60
DLKLTVVDSA EPVSFSKSNE ARTTSILASS PTSPGPSSKK VNGAQKVSCL VDDCKADLSS  120
CREYHKRHRV CERHSKTPTV MVKGEEKRFC QQCSRFHALG EFDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A4e-20107163460squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871790.11e-116squamosa promoter-binding-like protein 13A isoform X2
RefseqXP_015871791.11e-117squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_015871794.11e-116squamosa promoter-binding-like protein 13A isoform X2
RefseqXP_015871795.11e-117squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_015871799.11e-116squamosa promoter-binding-like protein 13A isoform X2
RefseqXP_015871800.11e-117squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_015872096.11e-118squamosa promoter-binding-like protein 13A, partial
RefseqXP_015872841.11e-119teosinte glume architecture 1-like, partial
RefseqXP_015872885.11e-118squamosa promoter-binding protein 2-like, partial
RefseqXP_024925862.11e-116squamosa promoter-binding-like protein 13A isoform X4
RefseqXP_024925868.11e-117squamosa promoter-binding-like protein 13A isoform X4
RefseqXP_024925870.11e-117squamosa promoter-binding-like protein 13A isoform X4
RefseqXP_024925872.11e-117squamosa promoter-binding-like protein 13A isoform X4
SwissprotQ49I572e-24TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A2P5CJQ33e-55A0A2P5CJQ3_PARAD; SBP-box transcription factor
STRINGXP_010112387.15e-40(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-26SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]