PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015872803.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 515aa MW: 57096.9 Da PI: 7.8354

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015872803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	211	252	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_015872803.1 211 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 252 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-6	208	274	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	210	254	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.7E-8	210	254	No hit	No description
Pfam	PF00170	7.6E-8	211	253	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.06E-22	212	264	No hit	No description
SuperFamily	SSF57959	1.29E-6	212	254	No hit	No description
PROSITE pattern	PS00036	0	215	230	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-32	293	368	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MASHRVGETG LSDSGPPTHH HHVPYAVFHG INASSTTFVN QEGSAFDFGE LEQAIALQGV 60 KVGNDEAKAS FFTGRPAATL EMFPSWPMRY QQTPRQRSSK SGGESTDSGS AVNTLSSKAD 120 YHQAAQLEPE SPISKKANSS SDHQQAFNQK HQQLQQQQQQ LQQDHMASSD HTSSRSTAGP 180 SSQIHSPSSS AKPTQEKRKG VGSTSEKPLD AKTLRRLAQN REAARKSRLR KKAYVQQLES 240 SRIKLTQLEQ DLQRARAQGL FLGGCGGAVG NVSSGAAIFD MEYARWLEDE QRHMTELRTG 300 LQAHLSDSEL RVIVDGYVSH YDEIFRLKGV AAKSDVFHLI TGMWTTPAER CFLWMGGFKP 360 SELIKMLTAQ LDPLTEQQVM GIYSLQHSSQ QAEEALFQGL EQLQQSLIET IAGGPVVDGM 420 QQMAVALGQL TNLEGFVRQA DNLRQQTLHR LRQILTVRQA ARCFLVIGEY YGRLRALSSL 480 WTSRPRESMM SDDASCQTTT ELQMVQPSHH HFSSF

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MASHRVGETG LSDSGPPTHH HHVPYAVFHG INASSTTFVN QEGSAFDFGE LEQAIALQGV  60
KVGNDEAKAS FFTGRPAATL EMFPSWPMRY QQTPRQRSSK SGGESTDSGS AVNTLSSKAD  120
YHQAAQLEPE SPISKKANSS SDHQQAFNQK HQQLQQQQQQ LQQDHMASSD HTSSRSTAGP  180
SSQIHSPSSS AKPTQEKRKG VGSTSEKPLD AKTLRRLAQN REAARKSRLR KKAYVQQLES  240
SRIKLTQLEQ DLQRARAQGL FLGGCGGAVG NVSSGAAIFD MEYARWLEDE QRHMTELRTG  300
LQAHLSDSEL RVIVDGYVSH YDEIFRLKGV AAKSDVFHLI TGMWTTPAER CFLWMGGFKP  360
SELIKMLTAQ LDPLTEQQVM GIYSLQHSSQ QAEEALFQGL EQLQQSLIET IAGGPVVDGM  420
QQMAVALGQL TNLEGFVRQA DNLRQQTLHR LRQILTVRQA ARCFLVIGEY YGRLRALSSL  480
WTSRPRESMM SDDASCQTTT ELQMVQPSHH HFSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015872803.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872803.1	0.0	transcription factor TGA9 isoform X2
Refseq	XP_024926308.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A067KMV4	0.0	A0A067KMV4_JATCU; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]