PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015872801.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 29605.1 Da PI: 6.3682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.1 | 1.1e-29 | 5 | 77 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+ap+g kt+W+mheyrl XP_015872801.1 5 GEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PRTLGIKKALVFYAGKAPRGIKTNWIMHEYRL 77 579************************************98..7789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.986 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-36 | 3 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 9 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPIGKPRTLG IKKALVFYAG 60 KAPRGIKTNW IMHEYRLANV DRSASKRNTN SRLDDWVLCR IYNKKGSVEK SFPVASQTVE 120 EEEFPELEDT KPQITMLSSQ QPSLLPPQPP QQQQQEEGFA ANQHFYMDTS DSMPKLHTDY 180 SSSSEHVVSA EVKCEKEVQS QPKWTPEFDN ISAMGNFNFD YMDSGFVDDP FGFQAQYQQV 240 DQMYPLQDMF NFSQKHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-51 | 2 | 110 | 64 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015872801.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872801.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-88 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2P5E2Y6 | 1e-119 | A0A2P5E2Y6_TREOI; NAC domain containing protein | ||||
STRING | POPTR_0007s04780.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 5e-80 | NAC family protein |