PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872673.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Dof
Protein Properties Length: 405aa    MW: 42701.9 Da    PI: 8.9798
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.54e-4047107262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e++lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  XP_015872673.1  47 PEQILKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVK 107
                     68999*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-2745105IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3349105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.43251105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMSPDNMPAA KPPPPPQKQQ QQAAGVKDEN QGSSSGRKAA STTRPPPEQI LKCPRCDSPN  60
TKFCYYNNYS LTQPRHFCKT CRRYWTKGGA LRNVPIGGGC RKNKKVKSCS SSSSRLSGGS  120
DSRDSSSCSD IGGGLKFFHG ISPAMDFQLG GLSFPRLQTS TTAAGIYNYN YNLPLSSFGD  180
SISNNASSSS SSSSCFNLEY QSAAGTSNSL MGFNYPLSLA TGSGGGGGGG GDSNFNGAIQ  240
SSMNVRSSLA SSIESLSCIN QDLHWKLQQQ RLSMLFGGGG GGDSLTTQKD VNAAASSLAL  300
LGNQTTQKSS SQSSSPILFR NLDVSKPHEV CTGSTTTGLQ HQARKEVSSS GDNTAATEWF  360
FGNSYAPPPP VTPTPTNSNS NGNENGNNWN GFQAWNDLQQ YSALP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868530.10.0dof zinc finger protein DOF5.7-like
RefseqXP_015872673.10.0dof zinc finger protein DOF5.7-like
TrEMBLA0A061DI281e-127A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein
STRINGEOX918921e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-46Dof family protein