PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015872516.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 684aa MW: 76145 Da PI: 5.1127

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015872516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.1	5.1e-78	424	684	1	261
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+avs++d + a++lL+++++++sp+gd qRla++f+++L+ar+a+ v++ y++l++++ts ++ l+ +++ ++P+ k+s XP_015872516.1 424 LRTLLILCAQAVSANDIRTAHELLKQIRQHSSPSGDGCQRLAHFFANGLEARIAGtGVQTFYSSLASKRTS---AVDILKCYQVHLSAFPFKKMS 515 5789*************************************************5556667777777666...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + aN++Il+ +e+++++Hi+Df+i +G+QWp L+q L+sR++gpp+lRiTg++ p++g +e++eetg+rLak++e++gvpfe+n+++++++e XP_015872516.1 516 MFFANKMILKMAEKATKLHIVDFGILYGFQWPILIQHLSSRSGGPPKLRITGIEIPQPGfrPSERIEETGRRLAKYCERFGVPFEYNAIASQTWE 610 ******************************************************9*************************9999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 ++++eeL+++++E+laVn+ ++ ++llde+v+++ +r++vL+l+++++P+++v + + n++ F++rf eal XP_015872516.1 611 TIQVEELKIDKDEVLAVNSFFRFKNLLDETVEVNCPRNAVLNLIRKMNPNIFVNNVVNGSFNAPFFVTRFREAL 684 ************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.354	398	684	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-75	424	684	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MIMDPSFTEF SDFTNGFVID KQTVVLPDSN QFPNLLDEYK FDQPSPDLDF MDNYLFFPPH 60 PDSGNFIPSM TVSSEVGSSI PSVSPSPDGS SSGPNSSVSP RGDSSPDESE FSESVIKYIS 120 QILMEEKIEE KPCMFFDPLG LQITEKSFYD VLVGEKNPNS SNQNPVYVDQ TVETHSPNQH 180 PLHFDQTVVG PDDNFSSLSS DNGGSSNSSN GPHWLGDIGD YKPSISPTPL PNDHNFRYNS 240 NHISDFSVPT YSLGDGLSSS SLNELAQNIF RDSDSISQFH RGLEEASKFL PKGNQLIIDL 300 ESSTFSPELK GESPKVVVKE EKSDRETSPN GLRGRKNHER ENIDLEEERS AKQSAVYVDE 360 SDLSDMFDRV LLCTDGNNHC AGSEVVISGT SKSLQPNEQP QGPHGNGGRA RSKKQGKKRE 420 TVDLRTLLIL CAQAVSANDI RTAHELLKQI RQHSSPSGDG CQRLAHFFAN GLEARIAGTG 480 VQTFYSSLAS KRTSAVDILK CYQVHLSAFP FKKMSMFFAN KMILKMAEKA TKLHIVDFGI 540 LYGFQWPILI QHLSSRSGGP PKLRITGIEI PQPGFRPSER IEETGRRLAK YCERFGVPFE 600 YNAIASQTWE TIQVEELKID KDEVLAVNSF FRFKNLLDET VEVNCPRNAV LNLIRKMNPN 660 IFVNNVVNGS FNAPFFVTRF REAL

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MIMDPSFTEF SDFTNGFVID KQTVVLPDSN QFPNLLDEYK FDQPSPDLDF MDNYLFFPPH  60
PDSGNFIPSM TVSSEVGSSI PSVSPSPDGS SSGPNSSVSP RGDSSPDESE FSESVIKYIS  120
QILMEEKIEE KPCMFFDPLG LQITEKSFYD VLVGEKNPNS SNQNPVYVDQ TVETHSPNQH  180
PLHFDQTVVG PDDNFSSLSS DNGGSSNSSN GPHWLGDIGD YKPSISPTPL PNDHNFRYNS  240
NHISDFSVPT YSLGDGLSSS SLNELAQNIF RDSDSISQFH RGLEEASKFL PKGNQLIIDL  300
ESSTFSPELK GESPKVVVKE EKSDRETSPN GLRGRKNHER ENIDLEEERS AKQSAVYVDE  360
SDLSDMFDRV LLCTDGNNHC AGSEVVISGT SKSLQPNEQP QGPHGNGGRA RSKKQGKKRE  420
TVDLRTLLIL CAQAVSANDI RTAHELLKQI RQHSSPSGDG CQRLAHFFAN GLEARIAGTG  480
VQTFYSSLAS KRTSAVDILK CYQVHLSAFP FKKMSMFFAN KMILKMAEKA TKLHIVDFGI  540
LYGFQWPILI QHLSSRSGGP PKLRITGIEI PQPGFRPSER IEETGRRLAK YCERFGVPFE  600
YNAIASQTWE TIQVEELKID KDEVLAVNSF FRFKNLLDET VEVNCPRNAV LNLIRKMNPN  660
IFVNNVVNGS FNAPFFVTRF REAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-33	413	684	8	267	Protein SCARECROW
5b3h_A	3e-33	407	684	1	266	Protein SCARECROW
5b3h_D	3e-33	407	684	1	266	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015872516.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872516.1	0.0	scarecrow-like protein 14, partial
Swissprot	Q9XE58	1e-172	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A314Z079	0.0	A0A314Z079_PRUYE; Scarecrow-like protein 33
STRING	XP_008245986.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-173	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]