PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872350.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 474aa    MW: 52752.2 Da    PI: 7.4648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.8e-192571148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+l++++v ++G ++W+tIa++++ gR +kqc++rw+++l
   XP_015872350.1 25 KGSWTKEEDDLIIRLVDKYGYKRWSTIAKYIP-GRIGKQCRERWHNHL 71
                     799*****************************.*************97 PP
2Myb_DNA-binding50.45.1e-1677119145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r+ WT+eE+  l+ +++ +G++ W+ Iar ++ gRt++ +k++w+
   XP_015872350.1  77 RDIWTEEEESALAYYHQIFGNK-WAEIARFLP-GRTDNAIKNHWN 119
                      567*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.246119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-12235IPR009057Homeodomain-like
PROSITE profilePS5129431.7942075IPR017930Myb domain
SuperFamilySSF466892.26E-3122118IPR009057Homeodomain-like
SMARTSM007172.7E-172473IPR001005SANT/Myb domain
PfamPF002491.7E-182571IPR001005SANT/Myb domain
CDDcd001679.73E-172771No hitNo description
Gene3DG3DSA:1.10.10.602.3E-263677IPR009057Homeodomain-like
PROSITE profilePS5129417.36476126IPR017930Myb domain
SMARTSM007172.0E-1576124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2078125IPR009057Homeodomain-like
CDDcd001675.48E-1280119No hitNo description
PfamPF002495.2E-1380119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
AYIPGRTDVQ CFHRWQKVLN PDLVKGSWTK EEDDLIIRLV DKYGYKRWST IAKYIPGRIG  60
KQCRERWHNH LDPVIKRDIW TEEEESALAY YHQIFGNKWA EIARFLPGRT DNAIKNHWNC  120
SLKRKSDLCS LDDGCQVHMC QTTSPDSSSC EISPACEKIG MQRRSSDGII SPTWELPLGD  180
YACFMKIGLG NTLGQTTFSQ EKTDKVVSLR SSEEGASGMT NKINEMQVDN SAKDSSLVVS  240
SSDVSLNATA STRLNGEVVL PVASGTSESP KRLNHYNPGL VNLGVGNIPV NPHPSSLTRE  300
FDENTGQVGN RKKSHEILVC TEETSHGCLR YEPLPQENLG TPVGLKGSSS TDQKSPSCYS  360
TPTERAQNLH VNYSSPESIL RFSAMTFTNT PSIIRKRKSS AVYAKCSDVT STPRWTVPSI  420
QEIDINSQDF PNSKQGLISF FHRPETSVAV KSLERCLEHA FDVEKESAAV GIAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-60212535158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-60212535158MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872350.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872350.10.0transcriptional activator Myb-like, partial
TrEMBLA0A2I4FAN31e-135A0A2I4FAN3_JUGRE; uncharacterized protein LOC108997066 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.26e-63myb domain protein 3r-5