PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872303.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 378aa    MW: 40815.6 Da    PI: 8.6331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23123224199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +   +
  XP_015872303.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--AD 213
                     89****************************996555555..8************************************************3..47 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_015872303.1 214 NGDLCVGIRRA 224
                     8888****996 PP
2Auxin_resp119.13.6e-39294377183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  XP_015872303.1 294 AAAMAAKGQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPNSPWRLLQ 377
                     678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-37117226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29119224IPR015300DNA-binding pseudobarrel domain
CDDcd100176.61E-22122223No hitNo description
PROSITE profilePS5086312.943123225IPR003340B3 DNA binding domain
SMARTSM010196.1E-22123225IPR003340B3 DNA binding domain
PfamPF023627.0E-22123224IPR003340B3 DNA binding domain
PfamPF065075.6E-34294377IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKEAEKSLDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQTNVDFSSA APHRIPALIL  60
CRVAAVKFMA DPETDEVFSK IKLVPLGNNE LNCEVGLGVG VGGDGVLGAG GGSDENPEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVIAKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RADNGDLCVG IRRAKRGIVG AGGGGGPESL  240
SPSGWKRNPG SCVSSYGGFS MLLREEENKL MMRNGCGNSI PGGGRVRPEA VVEAAAMAAK  300
GQPFEVVYYP RASTPEFCVK ASAVRAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTVASV  360
QVADPIRWPN SPWRLLQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-71837851368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234244e-52KU323424.1 UNVERIFIED: Trichosanthes dioica clone TdARF_32 auxin response factor 18-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872303.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A251NN200.0A0A251NN20_PRUPE; Auxin response factor
TrEMBLA0A251NN550.0A0A251NN55_PRUPE; Auxin response factor
STRINGXP_008245240.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2397722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-160auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]