PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015872096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 200aa MW: 22522.3 Da PI: 8.4945 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.7e-40 | 117 | 193 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_015872096.1 117 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 193 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-32 | 110 | 178 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.009 | 114 | 191 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-38 | 115 | 196 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-30 | 117 | 190 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVLLKGYGNQ GEQIEKVDGV MEWDLKEFAW ESTHELDQQK EESDLTAMVE FSTSKKQTTT 60 TTVNGSSGDL KLTVVDSAEP VSFSKSNEAR TTSILASSPT SPGPSSKKVN GAQKVSCLVD 120 DCKADLSSCR EYHKRHRVCE RHSKTPTVMV KGEEKRFCQQ CSRFHALGEF DEVKRSCRKR 180 LDGHNRRRRK SQPESLLFTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 117 | 190 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015872096.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871760.1 | 1e-145 | squamosa promoter-binding-like protein 13A isoform X3 | ||||
Refseq | XP_015871791.1 | 1e-145 | squamosa promoter-binding-like protein 13A isoform X3 | ||||
Refseq | XP_015871795.1 | 1e-145 | squamosa promoter-binding-like protein 13A isoform X3 | ||||
Refseq | XP_015871800.1 | 1e-145 | squamosa promoter-binding-like protein 13A isoform X3 | ||||
Refseq | XP_015872096.1 | 1e-147 | squamosa promoter-binding-like protein 13A, partial | ||||
TrEMBL | A0A2P5FC86 | 2e-74 | A0A2P5FC86_TREOI; SBP-box transcription factor | ||||
STRING | XP_010112387.1 | 5e-57 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10031 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-41 | SBP family protein |