PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015872051.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SRS

Protein Properties

Length: 347aa MW: 37997.5 Da PI: 6.9107

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015872051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226	7.1e-70	118	275	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkqsals 87 g+++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqqla +++++++++ + ++skr+r +++++++l+ XP_015872051.1 118 GGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLAELQQQQQQQQqhqqqqqqqfRVDNSKRQR--ENQESASLA 210 5789*************************************************99988877765555554433333333333..558889999 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +t+l++++s el ++P+ev+s+avfrcvrvs++dd ++++aYqtav+igGhvf+GiLydqG++ XP_015872051.1 211 CTRLPTTTSGLELGS-QFPTEVNSPAVFRCVRVSTMDDVDDQYAYQTAVNIGGHVFRGILYDQGPD 275 99999977765.5*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.9E-68	120	275	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-27	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-26	226	274	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAGFFCLGGG KEAPNNKQEE EEDHRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP 60 QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG 120 MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQQ LAELQQQQQQ 180 QQQHQQQQQQ QFRVDNSKRQ RENQESASLA CTRLPTTTSG LELGSQFPTE VNSPAVFRCV 240 RVSTMDDVDD QYAYQTAVNI GGHVFRGILY DQGPDGHYST GGEGSSGRGG DDDGVQQLNL 300 ITGGTTTTSS SGTHTGANPS SLLDPSLYPT PLNAFMAGTQ FFPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAGFFCLGGG KEAPNNKQEE EEDHRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP  60
QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG  120
MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQQ LAELQQQQQQ  180
QQQHQQQQQQ QFRVDNSKRQ RENQESASLA CTRLPTTTSG LELGSQFPTE VNSPAVFRCV  240
RVSTMDDVDD QYAYQTAVNI GGHVFRGILY DQGPDGHYST GGEGSSGRGG DDDGVQQLNL  300
ITGGTTTTSS SGTHTGANPS SLLDPSLYPT PLNAFMAGTQ FFPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015872051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872051.1	0.0	protein SHI RELATED SEQUENCE 1-like
Refseq	XP_015872151.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	1e-87	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	W9SFH8	1e-126	W9SFH8_9ROSA; Uncharacterized protein
STRING	XP_010105273.1	1e-127	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	8e-74	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]