PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 339aa MW: 36921.2 Da PI: 9.5374 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 7.9e-25 | 214 | 257 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e XP_015871942.1 214 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 257 79****************************************98 PP | |||||||
2 | QLQ | 60.3 | 5.3e-21 | 152 | 185 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvPp+Ll++i XP_015871942.1 152 PFTNAQWKELERQAMIYKYMVASVPVPPDLLLPI 185 8*******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.0E-12 | 151 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.126 | 152 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.7E-15 | 152 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.586 | 214 | 258 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.0E-21 | 215 | 257 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MRMEKFCVSD KEAKRNIYNK IGDDLEISAK VHSNSISSST ESLPACNSTM RMLHHDNHYR 60 PPSSSSSLRG LGGGDLGPTC NRAPAGPDDI YDVVVVSNAG SHAAAVASAA VSGDAVVRPL 120 QPFDISTTSP STSSPTTAFK FSGGMAATLG FPFTNAQWKE LERQAMIYKY MVASVPVPPD 180 LLLPINTRNL SAPAASQYSL GSDFSLRLSN NNTDPEPGRC KRTDGKKWRC SRDVAPDQKY 240 CERHMHRGRP RSRKHVEVHV NNNNKRTRHD HHHHHALPTT SSATMAVTNP TVNNNINGSH 300 TQFIGPTSAL PYHQSPVFLD KSTIKASTFD SSLSSEKVS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870430.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015870521.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015870685.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015871942.2 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015871945.1 | 0.0 | growth-regulating factor 8-like | ||||
TrEMBL | A0A251QPM7 | 2e-96 | A0A251QPM7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234659.1 | 2e-95 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 4e-38 | growth-regulating factor 7 |