PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 389aa MW: 41309.8 Da PI: 9.0682 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.4 | 4.9e-13 | 17 | 41 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ XP_015871885.1 17 EPVCQYYLKTGTCKFGASCKFHHPK 41 789********************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.2e-12 | 62 | 87 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ XP_015871885.1 62 GETECSYYLKTGQCKFGITCKFHHPQ 87 7789********************97 PP | |||||||
3 | zf-CCCH | 35.3 | 1.9e-11 | 219 | 245 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015871885.1 219 PGEPECQYYIKTGDCKYGSSCRYHHPR 245 5799*********************96 PP | |||||||
4 | zf-CCCH | 35.2 | 2e-11 | 266 | 291 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C f++++G+Ck+G++CkF H++ XP_015871885.1 266 GVQVCTFYLQNGHCKFGSTCKFDHPM 291 5678********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.676 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 17 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 17 | 41 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 19 | 41 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 66 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 220 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 223 | 247 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 224 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-7 | 266 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-6 | 268 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP KHGGGSLSQA PLNIYGYPLR 60 PGETECSYYL KTGQCKFGIT CKFHHPQPAG TSVSASAPQF YPTVQSPSVP MPEQYPGAST 120 SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP VSPVLSPGAA QPPVAATSLY 180 GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG EPECQYYIKT GDCKYGSSCR 240 YHHPRDRVVP RTNCLLSPIG LPLRPGVQVC TFYLQNGHCK FGSTCKFDHP MGNMRYNPSA 300 SSLIDMPVTP YPVGNLLGTL APSSTSSELR PELISGSKKE SYSTRMPSSA NTSSSSVGLI 360 FSQTGSVSLS EVQLSSQSSV PLSSSRSTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871885.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871714.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like, partial | ||||
Refseq | XP_015871885.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like, partial | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M5VMU1 | 0.0 | M5VMU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235007.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-179 | C3H family protein |