PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871885.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 389aa    MW: 41309.8 Da    PI: 9.0682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.9e-131741327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+++++tGtCk+G++CkF+H++
  XP_015871885.1 17 EPVCQYYLKTGTCKFGASCKFHHPK 41
                    789********************96 PP

2zf-CCCH36.96.2e-126287227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871885.1 62 GETECSYYLKTGQCKFGITCKFHHPQ 87
                    7789********************97 PP

3zf-CCCH35.31.9e-11219245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871885.1 219 PGEPECQYYIKTGDCKYGSSCRYHHPR 245
                     5799*********************96 PP

4zf-CCCH35.22e-11266291227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +   C f++++G+Ck+G++CkF H++
  XP_015871885.1 266 GVQVCTFYLQNGHCKFGSTCKFDHPM 291
                     5678********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.6761442IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-71441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-61741IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-101741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-51941IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.546088IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-96287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-66388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366218246IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8220245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6223247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5224245IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14264292IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7266295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-6268291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP KHGGGSLSQA PLNIYGYPLR  60
PGETECSYYL KTGQCKFGIT CKFHHPQPAG TSVSASAPQF YPTVQSPSVP MPEQYPGAST  120
SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP VSPVLSPGAA QPPVAATSLY  180
GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG EPECQYYIKT GDCKYGSSCR  240
YHHPRDRVVP RTNCLLSPIG LPLRPGVQVC TFYLQNGHCK FGSTCKFDHP MGNMRYNPSA  300
SSLIDMPVTP YPVGNLLGTL APSSTSSELR PELISGSKKE SYSTRMPSSA NTSSSSVGLI  360
FSQTGSVSLS EVQLSSQSSV PLSSSRSTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871885.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871714.10.0zinc finger CCCH domain-containing protein 32-like, partial
RefseqXP_015871885.10.0zinc finger CCCH domain-containing protein 32-like, partial
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM5VMU10.0M5VMU1_PRUPE; Uncharacterized protein
STRINGXP_008235007.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-179C3H family protein