PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871875.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 329aa    MW: 35490.4 Da    PI: 9.0046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-121541127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG+rC+++H++
  XP_015871875.1 15 PGVPNCVYYMRTGFCGYGSRCRYNHPR 41
                    5789*********************96 PP
2zf-CCCH40.73.9e-136286327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+++++tGtCk+G++CkF+H++
  XP_015871875.1 62 EPVCQYYLKTGTCKFGASCKFHHPK 86
                    789********************96 PP
3zf-CCCH37.25e-12107132227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871875.1 107 GETECSYYLKTGQCKFGITCKFHHPQ 132
                     7789********************97 PP
4zf-CCCH35.61.5e-11264290127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871875.1 264 PGEPECQYYIKTGDCKYGSSCRYHHPR 290
                     5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-61441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.221442IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-91641IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-61843IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-52041IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-75986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6765987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-66286IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-106286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-56486IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54105133IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4111131IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366263291IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5269290IPR000571Zinc finger, CCCH-type
SMARTSM0035611309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.005309329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MWQLGLSSES YPERPGVPNC VYYMRTGFCG YGSRCRYNHP RDRAAVAAAV RATGEYPERV  60
GEPVCQYYLK TGTCKFGASC KFHHPKHGGG SLSQAPLNIY GYPLRPGETE CSYYLKTGQC  120
KFGITCKFHH PQPAGTSVSA SAPQFYPTVQ SPSVPMPEQY PGASTSLRVA RPPLLPGSYV  180
QGAYGPMLFP PGVVPLHGWS PYSAPVSPVL SPGAAQPPVA ATSLYGVTQL SSSSPALARP  240
FPSLPSSIGA SSSSPKEQAF PERPGEPECQ YYIKTGDCKY GSSCRYHHPR DRVVPRTNCL  300
LSPIGLPLRP GVQVCTFYLQ NGHCKFGSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871875.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871145.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-178C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY60.0W9SLY6_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-170C3H family protein