PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015871844.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 16853.3 Da PI: 9.1579

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015871844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.4e-17	21	63	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+i nk n vtfskRrng++KKA+ L+ L + e+a+i+fs+ XP_015871844.1 21 KKIVNKDNLIVTFSKRRNGLFKKASQLCLLSGSEIAIIVFSPG 63 6799*************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-22	13	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.114	13	67	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.40E-24	14	68	No hit	No description
SuperFamily	SSF55455	4.71E-19	14	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-19	22	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MADSSSVARQ GGTGRKRIEI KKIVNKDNLI VTFSKRRNGL FKKASQLCLL SGSEIAIIVF 60 SPGERPYVEK IEVRGGNGTC EFWWDEEFEH MELHELQRFK FALEELRTKL AEKTEETERR 120 VFERDYLGVN SVKVIDPVVR TGRSYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015871844.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015871844.1	1e-104	agamous-like MADS-box protein AGL31
TrEMBL	A0A438JP51	8e-27	A0A438JP51_VITVI; Agamous-like MADS-box protein AGL62
STRING	XP_006468188.1	1e-23	(Citrus sinensis)
STRING	XP_006449753.1	6e-24	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	6e-19	M-type_MADS family protein