PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 388aa MW: 43523.7 Da PI: 8.1684 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.3 | 6.1e-40 | 125 | 201 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_015871799.1 125 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 201 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-31 | 118 | 186 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.009 | 122 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-37 | 123 | 204 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-29 | 125 | 198 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MYFASDFFLQ LRNQKGNQGE QIEKVDGVME WDLKEFAWES THELDQQKEE SDLTAMVEFS 60 TSKKQTTTTT VNGSSGDLKL TVVDSAEPVS FSKSNEARTT SILASSPTSP GPSSKKVNGA 120 QKVSCLVDDC KADLSSCREY HKRHRVCERH SKTPTVMVKG EEKRFCQQCS RFHALGEFDE 180 VKRSCRKRLD GHNRRRRKSQ PESLLFTSKS FLSSAYKGPK ILHFGSPPQI YAPTATTTMR 240 NGSEPFVYGR QQRNRPPDFS NGRDTQFFFL QENHPEKSNQ ATPEAFLCDY PILNTIKGQT 300 EKVPNEVSTG GCALYLLSSN PSSLQIPAGM DVNHHLVQSN DQMHQSSLQF PNSFSAFDHG 360 KDKPQNMILR MGPDGLLEHV GAPQAFPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-25 | 125 | 198 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871799.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871790.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
Refseq | XP_015871794.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
Refseq | XP_015871799.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
TrEMBL | A0A2P5FC86 | 1e-115 | A0A2P5FC86_TREOI; SBP-box transcription factor | ||||
STRING | XP_010112387.1 | 1e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10031 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-40 | SBP family protein |